(17 nodes) Carboxy-terminal domain protein kinase complex network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QD22	Uncharacterized protein. (315 aa)
	A0A1V6QFW3	Uncharacterized protein. (641 aa)
	A0A1V6QG08	Protein kinase domain-containing protein. (1072 aa)
	A0A1V6Q0D7	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (482 aa)
	A0A1V6PRV9	VWFA domain-containing protein. (410 aa)
	A0A1V6PUN5	Protein kinase domain-containing protein. (515 aa)
	A0A1V6PXF5	CID domain-containing protein. (267 aa)
	A0A1V6PYG3	Uncharacterized protein. (381 aa)
	A0A1V6QN12	SGNH_hydro domain-containing protein. (256 aa)
	A0A1V6PYR7	Uncharacterized protein. (722 aa)
	A0A1V6QG86	Uncharacterized protein. (821 aa)
	A0A1V6QGK4	CYCLIN domain-containing protein; Belongs to the cyclin family. (428 aa)
	A0A1V6QHJ1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (403 aa)
	A0A1V6QL76	Uncharacterized protein. (72 aa)
	A0A1V6Q309	Uncharacterized protein. (270 aa)
	A0A1V6Q4U4	RING-type domain-containing protein. (370 aa)
	A0A1V6Q966	CYCLIN domain-containing protein; Belongs to the cyclin family. (474 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PRV9	A0A1V6PYG3	VWFA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V6PRV9	A0A1V6PYR7	VWFA domain-containing protein.	Uncharacterized protein.	0.658
A0A1V6PRV9	A0A1V6Q0D7	VWFA domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
A0A1V6PRV9	A0A1V6Q4U4	VWFA domain-containing protein.	RING-type domain-containing protein.	0.995
A0A1V6PRV9	A0A1V6Q966	VWFA domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.684
A0A1V6PRV9	A0A1V6QD22	VWFA domain-containing protein.	Uncharacterized protein.	0.978
A0A1V6PRV9	A0A1V6QFW3	VWFA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V6PRV9	A0A1V6QG86	VWFA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V6PRV9	A0A1V6QGK4	VWFA domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.982
A0A1V6PRV9	A0A1V6QHJ1	VWFA domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.982
A0A1V6PRV9	A0A1V6QL76	VWFA domain-containing protein.	Uncharacterized protein.	0.997
A0A1V6PUN5	A0A1V6PXF5	Protein kinase domain-containing protein.	CID domain-containing protein.	0.836
A0A1V6PUN5	A0A1V6PYR7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.928
A0A1V6PUN5	A0A1V6Q4U4	Protein kinase domain-containing protein.	RING-type domain-containing protein.	0.668
A0A1V6PUN5	A0A1V6Q966	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.994
A0A1V6PUN5	A0A1V6QD22	Protein kinase domain-containing protein.	Uncharacterized protein.	0.651
A0A1V6PUN5	A0A1V6QG08	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.713
A0A1V6PUN5	A0A1V6QG86	Protein kinase domain-containing protein.	Uncharacterized protein.	0.665
A0A1V6PUN5	A0A1V6QGK4	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.783
A0A1V6PUN5	A0A1V6QHJ1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.839