(8 nodes) HAD-hyrolase-like network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QP27	Uncharacterized protein. (263 aa)
	A0A1V6QEH0	Uncharacterized protein. (482 aa)
	A0A1V6QDI0	Uncharacterized protein. (439 aa)
	A0A1V6Q936	Uncharacterized protein. (399 aa)
	A0A1V6Q450	Uncharacterized protein. (238 aa)
	A0A1V6PYQ0	Uncharacterized protein. (259 aa)
	A0A1V6PVX5	4-nitrophenylphosphatase. (310 aa)
	A0A1V6PT48	Uncharacterized protein. (252 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PVX5	A0A1V6Q936	4-nitrophenylphosphatase.	Uncharacterized protein.	0.467
A0A1V6PVX5	A0A1V6QDI0	4-nitrophenylphosphatase.	Uncharacterized protein.	0.467
A0A1V6PVX5	A0A1V6QEH0	4-nitrophenylphosphatase.	Uncharacterized protein.	0.467
A0A1V6Q450	A0A1V6QP27	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A1V6Q936	A0A1V6PVX5	Uncharacterized protein.	4-nitrophenylphosphatase.	0.467
A0A1V6Q936	A0A1V6QDI0	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A1V6Q936	A0A1V6QEH0	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A1V6QDI0	A0A1V6PVX5	Uncharacterized protein.	4-nitrophenylphosphatase.	0.467
A0A1V6QDI0	A0A1V6Q936	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A1V6QDI0	A0A1V6QEH0	Uncharacterized protein.	Uncharacterized protein.	0.768
A0A1V6QEH0	A0A1V6PVX5	Uncharacterized protein.	4-nitrophenylphosphatase.	0.467
A0A1V6QEH0	A0A1V6Q936	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A1V6QEH0	A0A1V6QDI0	Uncharacterized protein.	Uncharacterized protein.	0.768
A0A1V6QP27	A0A1V6Q450	Uncharacterized protein.	Uncharacterized protein.	0.893