95 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PP55	RRM domain-containing protein. (281 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (869 aa)
	A0A1V6PWQ6	Uncharacterized protein. (92 aa)
	A0A1V6PVW2	Mago-bind domain-containing protein. (207 aa)
	A0A1V6PVM5	eRF1_1 domain-containing protein. (529 aa)
	A0A1V6PV42	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (650 aa)
	A0A1V6PV13	RRM domain-containing protein. (1025 aa)
	A0A1V6PV07	Glyco_hydro_79C domain-containing protein. (543 aa)
	A0A1V6PUU8	Uncharacterized protein. (367 aa)
	A0A1V6PUE8	Uncharacterized protein. (1256 aa)
	A0A1V6PYV2	Helicase ATP-binding domain-containing protein. (1081 aa)
	A0A1V6PZ12	Uncharacterized protein. (1018 aa)
	A0A1V6PZ73	Uncharacterized protein. (854 aa)
	A0A1V6PZB0	Uncharacterized protein. (272 aa)
	A0A1V6PZE6	Uncharacterized protein. (254 aa)
	A0A1V6Q0T1	RING-type domain-containing protein. (773 aa)
	A0A1V6Q1F2	NTF2 domain-containing protein. (159 aa)
	A0A1V6Q1Q2	Uncharacterized protein. (289 aa)
	A0A1V6Q1V3	RNA-dependent RNA polymerase. (1382 aa)
	A0A1V6Q1W7	PWI domain-containing protein. (413 aa)
	A0A1V6Q211	Uncharacterized protein. (1344 aa)
	A0A1V6Q257	Uncharacterized protein. (362 aa)
	A0A1V6Q292	Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
	A0A1V6Q2R2	Tr-type G domain-containing protein. (717 aa)
	A0A1V6Q2W3	Tr-type G domain-containing protein. (791 aa)
	A0A1V6Q392	Uncharacterized protein. (479 aa)
	A0A1V6Q3F7	Uncharacterized protein. (442 aa)
	A0A1V6Q3J5	mRNA cap guanine-N7 methyltransferase. (535 aa)
	A0A1V6Q3M6	Uncharacterized protein. (536 aa)
	A0A1V6Q4N2	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
	A0A1V6Q579	Uncharacterized protein. (674 aa)
	A0A1V6Q5Y4	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (410 aa)
	A0A1V6Q5Y5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (738 aa)
	A0A1V6Q5Z2	RRM domain-containing protein. (190 aa)
	A0A1V6Q681	FAD_binding_2 domain-containing protein. (536 aa)
	A0A1V6Q6P2	DUF3453 domain-containing protein. (744 aa)
	A0A1V6Q7A5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (593 aa)
	A0A1V6Q9K7	Uncharacterized protein. (273 aa)
	A0A1V6QA20	Cleavage and polyadenylation specificity factor subunit 2. (997 aa)
	A0A1V6QA74	TPR_REGION domain-containing protein. (1002 aa)
	A0A1V6QAR9	GAR domain-containing protein. (1325 aa)
	A0A1V6QAU9	Uncharacterized protein. (819 aa)
	A0A1V6QBD7	WD_REPEATS_REGION domain-containing protein. (367 aa)
	A0A1V6QC64	RRM domain-containing protein. (254 aa)
	A0A1V6QCP1	RRM domain-containing protein. (175 aa)
	A0A1V6QCP5	Uncharacterized protein. (515 aa)
	A0A1V6QD71	Uncharacterized protein. (291 aa)
	A0A1V6QD77	Serine/threonine-protein phosphatase. (516 aa)
	A0A1V6QDF0	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (404 aa)
	A0A1V6QDI8	TYR_PHOSPHATASE_2 domain-containing protein. (744 aa)
	A0A1V6QDS4	Uncharacterized protein. (616 aa)
	A0A1V6QEY3	Uncharacterized protein. (529 aa)
	A0A1V6QF04	Uncharacterized protein. (115 aa)
	A0A1V6QF44	RRM domain-containing protein. (548 aa)
	A0A1V6QG43	Uncharacterized protein. (1390 aa)
	A0A1V6QGA7	Uncharacterized protein. (858 aa)
	A0A1V6QGC3	Uncharacterized protein. (841 aa)
	A0A1V6QGQ7	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (754 aa)
	A0A1V6QH08	SAP domain-containing protein. (598 aa)
	A0A1V6QHG8	Cytochrome b5 heme-binding domain-containing protein. (625 aa)
	A0A1V6QHJ5	Uncharacterized protein. (583 aa)
	A0A1V6QHS3	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (622 aa)
	A0A1V6QHY7	Uncharacterized protein. (521 aa)
	A0A1V6QIM5	DRMBL domain-containing protein. (836 aa)
	A0A1V6QJX9	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. (1009 aa)
	A0A1V6QKB9	Uncharacterized protein. (523 aa)
	A0A1V6QKC2	Uncharacterized protein. (355 aa)
	A0A1V6QKF2	NB-ARC domain-containing protein. (1491 aa)
	A0A1V6QLI0	Uncharacterized protein. (152 aa)
	A0A1V6QMC8	Uncharacterized protein. (737 aa)
	A0A1V6QMP4	Fip1 domain-containing protein. (333 aa)
	A0A1V6QMR9	RRM domain-containing protein. (291 aa)
	A0A1V6QN04	MPN domain-containing protein. (333 aa)
	A0A1V6QN17	Uncharacterized protein. (341 aa)
	A0A1V6QN88	WD_REPEATS_REGION domain-containing protein. (607 aa)
	A0A1V6QNE4	Serine/threonine-protein phosphatase. (322 aa)
	A0A1V6QNJ2	Uncharacterized protein. (2592 aa)
	A0A1V6QNM6	DUF676 domain-containing protein. (1148 aa)
	A0A1V6QNZ5	Nuclear cap-binding protein subunit 2. (175 aa)
	A0A1V6QPH7	Pinin_SDK_memA domain-containing protein. (325 aa)
	A0A1V6PR65	CPSF_A domain-containing protein. (1390 aa)
	A0A1V6PQ16	TPR_REGION domain-containing protein. (1426 aa)
	A0A1V6PYB3	Uncharacterized protein. (586 aa)
	A0A1V6PUA8	Uncharacterized protein. (614 aa)
	A0A1V6PTY5	F-box domain-containing protein. (563 aa)
	A0A1V6PTW6	ANK_REP_REGION domain-containing protein. (815 aa)
	A0A1V6PTU3	RRM domain-containing protein. (299 aa)
	A0A1V6PT30	Uncharacterized protein. (572 aa)
	A0A1V6PT27	RRM domain-containing protein. (326 aa)
	A0A1V6PSI7	FAD_binding_2 domain-containing protein. (489 aa)
	A0A1V6PSB8	Uncharacterized protein; Belongs to the DEAD box helicase family. (399 aa)
	A0A1V6PS24	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (268 aa)
	A0A1V6PS04	Uncharacterized protein. (601 aa)
	A0A1V6PRK3	Glyco_hydro_79C domain-containing protein. (510 aa)
	A0A1V6PR80	Uncharacterized protein. (621 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6PP55	A0A1V6PZE6	A0A1V6PP55	A0A1V6PZE6	RRM domain-containing protein.	Uncharacterized protein.	0.534
A0A1V6PP55	A0A1V6Q1W7	A0A1V6PP55	A0A1V6Q1W7	RRM domain-containing protein.	PWI domain-containing protein.	0.658
A0A1V6PP55	A0A1V6Q392	A0A1V6PP55	A0A1V6Q392	RRM domain-containing protein.	Uncharacterized protein.	0.428
A0A1V6PP55	A0A1V6Q5Z2	A0A1V6PP55	A0A1V6Q5Z2	RRM domain-containing protein.	RRM domain-containing protein.	0.416
A0A1V6PP55	A0A1V6QF44	A0A1V6PP55	A0A1V6QF44	RRM domain-containing protein.	RRM domain-containing protein.	0.407
A0A1V6PP55	A0A1V6QGC3	A0A1V6PP55	A0A1V6QGC3	RRM domain-containing protein.	Uncharacterized protein.	0.581
A0A1V6PP55	A0A1V6QHJ5	A0A1V6PP55	A0A1V6QHJ5	RRM domain-containing protein.	Uncharacterized protein.	0.852
A0A1V6PR65	A0A1V6PR80	A0A1V6PR65	A0A1V6PR80	CPSF_A domain-containing protein.	Uncharacterized protein.	0.998
A0A1V6PR65	A0A1V6PS04	A0A1V6PR65	A0A1V6PS04	CPSF_A domain-containing protein.	Uncharacterized protein.	0.949
A0A1V6PR65	A0A1V6PS24	A0A1V6PR65	A0A1V6PS24	CPSF_A domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.825
A0A1V6PR65	A0A1V6PT27	A0A1V6PR65	A0A1V6PT27	CPSF_A domain-containing protein.	RRM domain-containing protein.	0.833
A0A1V6PR65	A0A1V6PT30	A0A1V6PR65	A0A1V6PT30	CPSF_A domain-containing protein.	Uncharacterized protein.	0.567
A0A1V6PR65	A0A1V6PTU3	A0A1V6PR65	A0A1V6PTU3	CPSF_A domain-containing protein.	RRM domain-containing protein.	0.698
A0A1V6PR65	A0A1V6PUA8	A0A1V6PR65	A0A1V6PUA8	CPSF_A domain-containing protein.	Uncharacterized protein.	0.988
A0A1V6PR65	A0A1V6PZ73	A0A1V6PR65	A0A1V6PZ73	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
A0A1V6PR65	A0A1V6PZE6	A0A1V6PR65	A0A1V6PZE6	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
A0A1V6PR65	A0A1V6Q0T1	A0A1V6PR65	A0A1V6Q0T1	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.975
A0A1V6PR65	A0A1V6Q4N2	A0A1V6PR65	A0A1V6Q4N2	CPSF_A domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.997
A0A1V6PR65	A0A1V6Q579	A0A1V6PR65	A0A1V6Q579	CPSF_A domain-containing protein.	Uncharacterized protein.	0.668
A0A1V6PR65	A0A1V6Q5Z2	A0A1V6PR65	A0A1V6Q5Z2	CPSF_A domain-containing protein.	RRM domain-containing protein.	0.758