(37 nodes) RNA polymerase network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PWA3	Uncharacterized protein. (191 aa)
	A0A1V6PTS0	Uncharacterized protein. (502 aa)
	A0A1V6PV88	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (641 aa)
	A0A1V6PVK4	Uncharacterized protein. (853 aa)
	A0A1V6PWX4	RPOLD domain-containing protein. (334 aa)
	A0A1V6PX20	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A0A1V6PXW4	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (517 aa)
	A0A1V6Q164	RPOLD domain-containing protein. (372 aa)
	A0A1V6Q193	Uncharacterized protein. (74 aa)
	A0A1V6Q1H2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1254 aa)
	A0A1V6Q1R0	Uncharacterized protein. (390 aa)
	A0A1V6Q246	Uncharacterized protein. (306 aa)
	A0A1V6Q2S6	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (352 aa)
	A0A1V6Q3P5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1208 aa)
	A0A1V6Q4H5	Uncharacterized protein. (669 aa)
	A0A1V6Q4S0	Uncharacterized protein. (155 aa)
	A0A1V6Q6H2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A1V6Q6N1	RNA_pol_L_2 domain-containing protein. (170 aa)
	A0A1V6Q6V0	Uncharacterized protein. (193 aa)
	A0A1V6QA54	RBR-type E3 ubiquitin transferase. (654 aa)
	A0A1V6QAJ7	RNA_pol_L_2 domain-containing protein. (137 aa)
	A0A1V6QCG5	CBFD_NFYB_HMF domain-containing protein. (187 aa)
	A0A1V6QE75	Uncharacterized protein. (77 aa)
	A0A1V6QED3	DPH-type MB domain-containing protein. (153 aa)
	A0A1V6QEM3	Uncharacterized protein. (369 aa)
	A0A1V6QEP8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1248 aa)
	A0A1V6QGF6	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (250 aa)
	A0A1V6QGI6	Uncharacterized protein. (649 aa)
	A0A1V6QHU0	Uncharacterized protein. (169 aa)
	A0A1V6QJE5	Uncharacterized protein. (525 aa)
	A0A1V6QJM9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1448 aa)
	A0A1V6QKP9	Uncharacterized protein. (532 aa)
	A0A1V6QMP0	Endo/exonuclease/phosphatase domain-containing protein. (288 aa)
	A0A1V6QN34	Uncharacterized protein. (409 aa)
	A0A1V6QNA5	Uncharacterized protein. (581 aa)
	A0A1V6QNY9	Uncharacterized protein. (320 aa)
	A0A1V6QPC5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PTS0	A0A1V6PV88	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.724
A0A1V6PTS0	A0A1V6PWX4	Uncharacterized protein.	RPOLD domain-containing protein.	0.984
A0A1V6PTS0	A0A1V6PX20	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
A0A1V6PTS0	A0A1V6Q164	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
A0A1V6PTS0	A0A1V6Q193	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6PTS0	A0A1V6Q1H2	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.967
A0A1V6PTS0	A0A1V6Q1R0	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6PTS0	A0A1V6Q246	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A1V6PTS0	A0A1V6Q2S6	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.813
A0A1V6PTS0	A0A1V6Q3P5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
A0A1V6PTS0	A0A1V6Q4S0	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6PTS0	A0A1V6Q6H2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A1V6PTS0	A0A1V6Q6N1	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.413
A0A1V6PTS0	A0A1V6Q6V0	Uncharacterized protein.	Uncharacterized protein.	0.641
A0A1V6PTS0	A0A1V6QAJ7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.991
A0A1V6PTS0	A0A1V6QE75	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6PTS0	A0A1V6QEP8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1V6PTS0	A0A1V6QGI6	Uncharacterized protein.	Uncharacterized protein.	0.452
A0A1V6PTS0	A0A1V6QHU0	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A1V6PTS0	A0A1V6QJE5	Uncharacterized protein.	Uncharacterized protein.	0.411