STRINGSTRING
Tlet_0182 Tlet_0182 Tlet_0184 Tlet_0184 Tlet_0185 Tlet_0185 Tlet_0186 Tlet_0186 xylB xylB rbsD rbsD Tlet_0190 Tlet_0190 Tlet_0358 Tlet_0358 Tlet_0359 Tlet_0359 rbsA rbsA Tlet_0389 Tlet_0389 Tlet_0390 Tlet_0390 Tlet_0391 Tlet_0391 Tlet_1325 Tlet_1325 rbsA-2 rbsA-2 Tlet_1328 Tlet_1328 Tlet_1417 Tlet_1417 Tlet_1418 Tlet_1418 Tlet_1419 Tlet_1419 Tlet_1420 Tlet_1420 Tlet_1421 Tlet_1421 Tlet_1422 Tlet_1422 Tlet_1423 Tlet_1423 Tlet_1424 Tlet_1424
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tlet_0182PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein. (321 aa)
Tlet_0184PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_3003 ABC transporter related. (503 aa)
Tlet_0185Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: psb:Psyr_2570 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (323 aa)
Tlet_0186PFAM: Transaldolase; KEGG: lmo:lmo0500 hypothetical protein. (214 aa)
xylBPFAM: carbohydrate kinase FGGY; KEGG: bth:BT_4423 xylulose kinase. (507 aa)
rbsDRbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (140 aa)
Tlet_0190PFAM: aldo/keto reductase; KEGG: sfu:Sfum_1762 aldo/keto reductase. (324 aa)
Tlet_0358Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: tma:TM0112 simple sugar transport system permease protein. (326 aa)
Tlet_0359PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM0114 simple sugar transport system substrate-binding protein. (323 aa)
rbsAABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (507 aa)
Tlet_0389PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2825 periplasmic binding protein/LacI transcriptional regulator. (314 aa)
Tlet_0390Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ctc:CTC02349 ribose transport system permease protein rbsC. (318 aa)
Tlet_0391PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH03646 probable sugar ABC transporter, ATP-binding protein. (496 aa)
Tlet_1325Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM0958 D-ribose transport system substrate-binding protein. (314 aa)
rbsA-2ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (511 aa)
Tlet_1328Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: tma:TM0955 D-ribose transport system permease protein. (343 aa)
Tlet_1417Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: sth:STH2298 DeoR-family transcriptional regulator. (254 aa)
Tlet_1418PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_L_86 putative periplasmic binding protein, probable substrate ribose. (337 aa)
Tlet_1419PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_85 ABC transporter ATP binding protein. (501 aa)
Tlet_1420PFAM: inner-membrane translocator; KEGG: yps:YPTB1688 ABC sugar transporter, permease subunit; Belongs to the binding-protein-dependent transport system permease family. (338 aa)
Tlet_1421PFAM: inner-membrane translocator; KEGG: rru:Rru_A2299 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
Tlet_1422PFAM: peptidase M29 aminopeptidase II; KEGG: det:DET0911 aminopeptidase protein. (355 aa)
Tlet_1423PFAM: carbohydrate kinase FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; Belongs to the FGGY kinase family. (517 aa)
Tlet_1424PFAM: photosystem I assembly BtpA; KEGG: stm:STM1615 putative nucleoside triphosphatase. (270 aa)
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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