STRINGSTRING
Tlet_1943 Tlet_1943 Tlet_1296 Tlet_1296 Tlet_0915 Tlet_0915 Tlet_0913 Tlet_0913 Tlet_0218 Tlet_0218
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tlet_1943KEGG: lic:LIC13065 hypothetical protein. (339 aa)
Tlet_1296PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tma:TM1193 beta-galactosidase. (1010 aa)
Tlet_0915PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tma:TM1193 beta-galactosidase. (1090 aa)
Tlet_0913Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Ig domain protein; glycosyl hydrolase 53 domain protein; KEGG: tma:TM1201 arabinogalactan endo-1,4-beta-galactosidase, putative. (597 aa)
Tlet_0218PFAM: Glycoside hydrolase family 42 domain protein; KEGG: sus:Acid_7597 beta-galactosidase. (718 aa)
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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