Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dnaE | dnaN | llmg_0483 | llmg_0002 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Beta subunit of DNA polymerase III; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | 0.994 |
| dnaE | dnaQ | llmg_0483 | llmg_1537 | DNA polymerase III alpha subunit; High confidence in function and specificity. | DNA polymerase III, epsilon chain; High confidence in function and specificity. | 0.957 |
| dnaE | dnaX | llmg_0483 | llmg_2478 | DNA polymerase III alpha subunit; High confidence in function and specificity. | DNA polymerase III subunits gamma / tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.994 |
| dnaE | holA | llmg_0483 | llmg_0768 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Putative DNA polymerase III, delta subunit; High confidence in function and specificity. | 0.992 |
| dnaE | holB | llmg_0483 | llmg_0416 | DNA polymerase III alpha subunit; High confidence in function and specificity. | holB: DNA polymerase III, delta prime subunit; High confidence in function and specificity. | 0.994 |
| dnaE | polA | llmg_0483 | llmg_2425 | DNA polymerase III alpha subunit; High confidence in function and specificity. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity. | 0.795 |
| dnaE | polC | llmg_0483 | llmg_2409 | DNA polymerase III alpha subunit; High confidence in function and specificity. | DNA polymerase III alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.953 |
| dnaE | ps416 | llmg_0483 | llmg_2126 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Single-strand binding protein ssB; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.591 |
| dnaE | recA | llmg_0483 | llmg_0374 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Recombination protein A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.833 |
| dnaE | recJ | llmg_0483 | llmg_0606 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Single strand DNA-specific exonuclease; DHH family; High confidence in function and specificity. | 0.715 |
| dnaE | recR | llmg_0483 | llmg_0359 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.518 |
| dnaE | ruvA | llmg_0483 | llmg_2488 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Holliday junction DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.437 |
| dnaE | ruvB | llmg_0483 | llmg_2487 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Holliday junction DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.458 |
| dnaE | ssbA | llmg_0483 | llmg_0409 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Helix-destabilizing protein, Nucleic acid-binding OB-fold; High confidence in function and specificity. | 0.591 |
| dnaE | ssbB | llmg_0483 | llmg_2474 | DNA polymerase III alpha subunit; High confidence in function and specificity. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.651 |
| dnaN | dnaE | llmg_0002 | llmg_0483 | Beta subunit of DNA polymerase III; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | DNA polymerase III alpha subunit; High confidence in function and specificity. | 0.994 |
| dnaN | dnaQ | llmg_0002 | llmg_1537 | Beta subunit of DNA polymerase III; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | DNA polymerase III, epsilon chain; High confidence in function and specificity. | 0.959 |
| dnaN | dnaX | llmg_0002 | llmg_2478 | Beta subunit of DNA polymerase III; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | DNA polymerase III subunits gamma / tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.998 |
| dnaN | holA | llmg_0002 | llmg_0768 | Beta subunit of DNA polymerase III; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | Putative DNA polymerase III, delta subunit; High confidence in function and specificity. | 0.996 |
| dnaN | holB | llmg_0002 | llmg_0416 | Beta subunit of DNA polymerase III; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | holB: DNA polymerase III, delta prime subunit; High confidence in function and specificity. | 0.999 |
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