(5 nodes) Dynactin complex network (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	jhhlp_007653	Uncharacterized protein. (223 aa)
	jhhlp_007092	Uncharacterized protein. (438 aa)
	jhhlp_002118	Uncharacterized protein. (593 aa)
	jhhlp_001525	Uncharacterized protein. (798 aa)
	jhhlp_001503	CAP-Gly domain-containing protein. (1328 aa)

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_001503	jhhlp_001525	A0A2N3NIE9	A0A2N3NIE8	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.989
jhhlp_001503	jhhlp_002118	A0A2N3NIE9	A0A2N3ND78	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.990
jhhlp_001503	jhhlp_007092	A0A2N3NIE9	A0A2N3N1N0	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.999
jhhlp_001503	jhhlp_007653	A0A2N3NIE9	A0A2N3N068	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.985
jhhlp_001525	jhhlp_001503	A0A2N3NIE8	A0A2N3NIE9	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.989
jhhlp_001525	jhhlp_002118	A0A2N3NIE8	A0A2N3ND78	Uncharacterized protein.	Uncharacterized protein.	0.995
jhhlp_001525	jhhlp_007092	A0A2N3NIE8	A0A2N3N1N0	Uncharacterized protein.	Uncharacterized protein.	0.995
jhhlp_001525	jhhlp_007653	A0A2N3NIE8	A0A2N3N068	Uncharacterized protein.	Uncharacterized protein.	0.992
jhhlp_002118	jhhlp_001503	A0A2N3ND78	A0A2N3NIE9	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.990
jhhlp_002118	jhhlp_001525	A0A2N3ND78	A0A2N3NIE8	Uncharacterized protein.	Uncharacterized protein.	0.995
jhhlp_002118	jhhlp_007092	A0A2N3ND78	A0A2N3N1N0	Uncharacterized protein.	Uncharacterized protein.	0.997
jhhlp_002118	jhhlp_007653	A0A2N3ND78	A0A2N3N068	Uncharacterized protein.	Uncharacterized protein.	0.999
jhhlp_007092	jhhlp_001503	A0A2N3N1N0	A0A2N3NIE9	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.999
jhhlp_007092	jhhlp_001525	A0A2N3N1N0	A0A2N3NIE8	Uncharacterized protein.	Uncharacterized protein.	0.995
jhhlp_007092	jhhlp_002118	A0A2N3N1N0	A0A2N3ND78	Uncharacterized protein.	Uncharacterized protein.	0.997
jhhlp_007092	jhhlp_007653	A0A2N3N1N0	A0A2N3N068	Uncharacterized protein.	Uncharacterized protein.	0.992
jhhlp_007653	jhhlp_001503	A0A2N3N068	A0A2N3NIE9	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.985
jhhlp_007653	jhhlp_001525	A0A2N3N068	A0A2N3NIE8	Uncharacterized protein.	Uncharacterized protein.	0.992
jhhlp_007653	jhhlp_002118	A0A2N3N068	A0A2N3ND78	Uncharacterized protein.	Uncharacterized protein.	0.999
jhhlp_007653	jhhlp_007092	A0A2N3N068	A0A2N3N1N0	Uncharacterized protein.	Uncharacterized protein.	0.992