(13 nodes) Preribosome, small subunit precursor network (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	jhhlp_000864	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (385 aa)
	jhhlp_007215	CBF domain-containing protein. (546 aa)
	jhhlp_007230	DRIM domain-containing protein. (2655 aa)
	jhhlp_006759	Uncharacterized protein. (211 aa)
	jhhlp_005848	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (494 aa)
	jhhlp_006598	Uncharacterized protein. (414 aa)
	jhhlp_003503	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (323 aa)
	jhhlp_003592	RIO domain-containing protein. (431 aa)
	jhhlp_003636	Uncharacterized protein. (488 aa)
	jhhlp_004299	Bms1-type G domain-containing protein. (809 aa)
	jhhlp_004300	WD_REPEATS_REGION domain-containing protein. (554 aa)
	jhhlp_002079	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (260 aa)
	jhhlp_001315	G-patch domain-containing protein. (1280 aa)

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000864	jhhlp_001315	A0A2N3NJN5	A0A2N3NHT1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	G-patch domain-containing protein.	0.922
jhhlp_000864	jhhlp_002079	A0A2N3NJN5	A0A2N3ND29	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.951
jhhlp_000864	jhhlp_003503	A0A2N3NJN5	A0A2N3N8X9	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.873
jhhlp_000864	jhhlp_003592	A0A2N3NJN5	A0A2N3N964	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	RIO domain-containing protein.	0.984
jhhlp_000864	jhhlp_003636	A0A2N3NJN5	A0A2N3N9A4	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein.	0.998
jhhlp_000864	jhhlp_004299	A0A2N3NJN5	A0A2N3NB70	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Bms1-type G domain-containing protein.	0.995
jhhlp_000864	jhhlp_004300	A0A2N3NJN5	A0A2N3NB72	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	WD_REPEATS_REGION domain-containing protein.	0.963
jhhlp_000864	jhhlp_005848	A0A2N3NJN5	A0A2N3N492	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.953
jhhlp_000864	jhhlp_006598	A0A2N3NJN5	A0A2N3N6D4	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein.	0.986
jhhlp_000864	jhhlp_006759	A0A2N3NJN5	A0A2N3N2L9	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein.	0.784
jhhlp_000864	jhhlp_007215	A0A2N3NJN5	A0A2N3N217	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	CBF domain-containing protein.	0.978
jhhlp_000864	jhhlp_007230	A0A2N3NJN5	A0A2N3N245	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	DRIM domain-containing protein.	0.932
jhhlp_001315	jhhlp_000864	A0A2N3NHT1	A0A2N3NJN5	G-patch domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.922
jhhlp_001315	jhhlp_002079	A0A2N3NHT1	A0A2N3ND29	G-patch domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.947
jhhlp_001315	jhhlp_003503	A0A2N3NHT1	A0A2N3N8X9	G-patch domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
jhhlp_001315	jhhlp_003592	A0A2N3NHT1	A0A2N3N964	G-patch domain-containing protein.	RIO domain-containing protein.	0.827
jhhlp_001315	jhhlp_003636	A0A2N3NHT1	A0A2N3N9A4	G-patch domain-containing protein.	Uncharacterized protein.	0.998
jhhlp_001315	jhhlp_004299	A0A2N3NHT1	A0A2N3NB70	G-patch domain-containing protein.	Bms1-type G domain-containing protein.	0.943
jhhlp_001315	jhhlp_004300	A0A2N3NHT1	A0A2N3NB72	G-patch domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
jhhlp_001315	jhhlp_005848	A0A2N3NHT1	A0A2N3N492	G-patch domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.870