6 items (Puccinia graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGTG_00058	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family. (158 aa)
	PGTG_00282	Uncharacterized protein. (144 aa)
	PGTG_05054	Uncharacterized protein. (180 aa)
	PGTG_11377	Uncharacterized protein. (281 aa)
	PGTG_12718	Uncharacterized protein. (202 aa)
	PGTG_13806	Uncharacterized protein. (255 aa)

Your Current Organism:

Puccinia graminis

NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGTG_00058	PGTG_00282	E3JQ19	E3JR18	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
PGTG_00058	PGTG_05054	E3JQ19	E3K698	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
PGTG_00058	PGTG_11377	E3JQ19	E3KM60	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
PGTG_00058	PGTG_12718	E3JQ19	E3KRQ2	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
PGTG_00058	PGTG_13806	E3JQ19	E3KUQ2	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_00058	E3JR18	E3JQ19	Uncharacterized protein.	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	0.999
PGTG_00282	PGTG_05054	E3JR18	E3K698	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_11377	E3JR18	E3KM60	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_12718	E3JR18	E3KRQ2	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_13806	E3JR18	E3KUQ2	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_05054	PGTG_00058	E3K698	E3JQ19	Uncharacterized protein.	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	0.999
PGTG_05054	PGTG_00282	E3K698	E3JR18	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_05054	PGTG_11377	E3K698	E3KM60	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_05054	PGTG_12718	E3K698	E3KRQ2	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_05054	PGTG_13806	E3K698	E3KUQ2	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_11377	PGTG_00058	E3KM60	E3JQ19	Uncharacterized protein.	60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	0.999
PGTG_11377	PGTG_00282	E3KM60	E3JR18	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_11377	PGTG_05054	E3KM60	E3K698	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_11377	PGTG_12718	E3KM60	E3KRQ2	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_11377	PGTG_13806	E3KM60	E3KUQ2	Uncharacterized protein.	Uncharacterized protein.	0.999