60 items (Puccinia graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGTG_15416	Ribosomal_S7 domain-containing protein. (251 aa)
	PGTG_07665	Uncharacterized protein. (242 aa)
	PGTG_15836	Uncharacterized protein. (271 aa)
	PGTG_15994	Uncharacterized protein. (124 aa)
	PGTG_15974	MRP-S28 domain-containing protein. (386 aa)
	PGTG_16649	Urease accessory protein. (268 aa)
	PGTG_16653	AB hydrolase-1 domain-containing protein. (182 aa)
	PGTG_07575	30S ribosomal protein S8. (157 aa)
	PGTG_07958	Ribosomal_L18e/L15P domain-containing protein. (298 aa)
	PGTG_06911	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (94 aa)
	PGTG_07171	Uncharacterized protein. (177 aa)
	PGTG_05054	Uncharacterized protein. (180 aa)
	PGTG_06101	Uncharacterized protein. (291 aa)
	PGTG_04478	Uncharacterized protein. (232 aa)
	PGTG_04286	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (342 aa)
	PGTG_04197	SRR1 domain-containing protein. (228 aa)
	PGTG_04184	Uncharacterized protein. (223 aa)
	PGTG_03479	Uncharacterized protein. (232 aa)
	PGTG_03454	Small subunit ribosomal protein S12. (187 aa)
	PGTG_02427	Uncharacterized protein. (155 aa)
	PGTG_02269	Uncharacterized protein. (457 aa)
	PGTG_01180	Uncharacterized protein. (339 aa)
	PGTG_01020	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (367 aa)
	PGTG_01543	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (234 aa)
	PGTG_01533	RNase III domain-containing protein. (368 aa)
	PGTG_00595	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	PGTG_00282	Uncharacterized protein. (144 aa)
	PGTG_00437	Ribosomal_L2_C domain-containing protein. (432 aa)
	PGTG_00231	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (188 aa)
	PGTG_17154	Ribosomal_L30 domain-containing protein. (131 aa)
	PGTG_17155	Large subunit ribosomal protein L13. (208 aa)
	PGTG_17897	Uncharacterized protein. (225 aa)
	PGTG_18718	Uncharacterized protein. (374 aa)
	PGTG_18769	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (339 aa)
	PGTG_19436	Uncharacterized protein. (271 aa)
	PGTG_19325	Uncharacterized protein. (203 aa)
	PGTG_00431	Uncharacterized protein. (103 aa)
	PGTG_00029	Ribosomal_L5_C domain-containing protein. (363 aa)
	PGTG_19598	Uncharacterized protein. (272 aa)
	PGTG_20023	S4 RNA-binding domain-containing protein. (399 aa)
	PGTG_21123	Uncharacterized protein. (103 aa)
	PGTG_21513	Uncharacterized protein. (292 aa)
	PGTG_21891	Uncharacterized protein. (277 aa)
	PGTG_14455	L51_S25_CI-B8 domain-containing protein. (169 aa)
	PGTG_11377	Uncharacterized protein. (281 aa)
	PGTG_10601	Uncharacterized protein. (351 aa)
	PGTG_07709	Large subunit ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (171 aa)
	PGTG_07511	Uncharacterized protein. (278 aa)
	PGTG_14036	Uncharacterized protein. (406 aa)
	PGTG_14134	Uncharacterized protein. (399 aa)
	PGTG_15163	RNase III domain-containing protein. (638 aa)
	PGTG_11005	Uncharacterized protein. (291 aa)
	PGTG_11998	Arf-GAP domain-containing protein. (444 aa)
	PGTG_12128	Uncharacterized protein. (414 aa)
	PGTG_13043	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (339 aa)
	PGTG_12718	Uncharacterized protein. (202 aa)
	PGTG_13806	Uncharacterized protein. (255 aa)
	PGTG_14339	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (308 aa)
	PGTG_15172	MRP-L46 domain-containing protein. (332 aa)
	PGTG_15452	Cytochrome c oxidase subunit XI assembly protein. (293 aa)

Your Current Organism:

Puccinia graminis

NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGTG_00029	PGTG_00231	E3JPZ0	E3JQ97	Ribosomal_L5_C domain-containing protein.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.857
PGTG_00029	PGTG_00282	E3JPZ0	E3JR18	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.992
PGTG_00029	PGTG_00431	E3JPZ0	E3JQ89	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.868
PGTG_00029	PGTG_00437	E3JPZ0	E3JQB7	Ribosomal_L5_C domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.994
PGTG_00029	PGTG_00595	E3JPZ0	E3JRV8	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.989
PGTG_00029	PGTG_01020	E3JPZ0	E3JUG4	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.995
PGTG_00029	PGTG_01180	E3JPZ0	E3JUX4	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.990
PGTG_00029	PGTG_01543	E3JPZ0	E3JSH7	Ribosomal_L5_C domain-containing protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.994
PGTG_00029	PGTG_02269	E3JPZ0	E3JXN3	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.938
PGTG_00029	PGTG_02427	E3JPZ0	E3JY41	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.928
PGTG_00029	PGTG_03454	E3JPZ0	E3JZM3	Ribosomal_L5_C domain-containing protein.	Small subunit ribosomal protein S12.	0.989
PGTG_00029	PGTG_03479	E3JPZ0	E3JZP8	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.941
PGTG_00029	PGTG_04184	E3JPZ0	E3K1Q3	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.979
PGTG_00029	PGTG_04197	E3JPZ0	E3K1R6	Ribosomal_L5_C domain-containing protein.	SRR1 domain-containing protein.	0.905
PGTG_00029	PGTG_04286	E3JPZ0	E3K1W1	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.992
PGTG_00029	PGTG_04478	E3JPZ0	E3K2F3	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.945
PGTG_00029	PGTG_05054	E3JPZ0	E3K698	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.984
PGTG_00029	PGTG_06101	E3JPZ0	E3K5M7	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.896
PGTG_00029	PGTG_06911	E3JPZ0	E3KAD3	Ribosomal_L5_C domain-containing protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
PGTG_00029	PGTG_07171	E3JPZ0	E3K9N3	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.868