22 items (Puccinia graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGTG_12128	Uncharacterized protein. (414 aa)
	PGTG_14339	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (308 aa)
	PGTG_15416	Ribosomal_S7 domain-containing protein. (251 aa)
	PGTG_15836	Uncharacterized protein. (271 aa)
	PGTG_15994	Uncharacterized protein. (124 aa)
	PGTG_15974	MRP-S28 domain-containing protein. (386 aa)
	PGTG_16653	AB hydrolase-1 domain-containing protein. (182 aa)
	PGTG_18718	Uncharacterized protein. (374 aa)
	PGTG_19436	Uncharacterized protein. (271 aa)
	PGTG_19325	Uncharacterized protein. (203 aa)
	PGTG_20023	S4 RNA-binding domain-containing protein. (399 aa)
	PGTG_21123	Uncharacterized protein. (103 aa)
	PGTG_21513	Uncharacterized protein. (292 aa)
	PGTG_00282	Uncharacterized protein. (144 aa)
	PGTG_02269	Uncharacterized protein. (457 aa)
	PGTG_03454	Small subunit ribosomal protein S12. (187 aa)
	PGTG_04184	Uncharacterized protein. (223 aa)
	PGTG_04478	Uncharacterized protein. (232 aa)
	PGTG_07575	30S ribosomal protein S8. (157 aa)
	PGTG_10601	Uncharacterized protein. (351 aa)
	PGTG_11377	Uncharacterized protein. (281 aa)
	PGTG_11998	Arf-GAP domain-containing protein. (444 aa)

Your Current Organism:

Puccinia graminis

NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGTG_00282	PGTG_02269	E3JR18	E3JXN3	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_03454	E3JR18	E3JZM3	Uncharacterized protein.	Small subunit ribosomal protein S12.	0.999
PGTG_00282	PGTG_04184	E3JR18	E3K1Q3	Uncharacterized protein.	Uncharacterized protein.	0.998
PGTG_00282	PGTG_04478	E3JR18	E3K2F3	Uncharacterized protein.	Uncharacterized protein.	0.943
PGTG_00282	PGTG_07575	E3JR18	E3KCM6	Uncharacterized protein.	30S ribosomal protein S8.	0.993
PGTG_00282	PGTG_10601	E3JR18	E3KIU8	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_11377	E3JR18	E3KM60	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_12128	E3JR18	E3KPE7	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_14339	E3JR18	E3KVG0	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
PGTG_00282	PGTG_15416	E3JR18	E3KZN5	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.998
PGTG_00282	PGTG_15836	E3JR18	E3KZZ9	Uncharacterized protein.	Uncharacterized protein.	0.994
PGTG_00282	PGTG_15974	E3JR18	E3L0S2	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.999
PGTG_00282	PGTG_15994	E3JR18	E3L0L8	Uncharacterized protein.	Uncharacterized protein.	0.967
PGTG_00282	PGTG_18718	E3JR18	E3L7R1	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_19325	E3JR18	E3L9Q3	Uncharacterized protein.	Uncharacterized protein.	0.990
PGTG_00282	PGTG_19436	E3JR18	E3L9H2	Uncharacterized protein.	Uncharacterized protein.	0.994
PGTG_00282	PGTG_20023	E3JR18	E3NX64	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.988
PGTG_00282	PGTG_21123	E3JR18	H6QQG4	Uncharacterized protein.	Uncharacterized protein.	0.999
PGTG_00282	PGTG_21513	E3JR18	H6QRI9	Uncharacterized protein.	Uncharacterized protein.	0.962
PGTG_02269	PGTG_00282	E3JXN3	E3JR18	Uncharacterized protein.	Uncharacterized protein.	0.999