23 items (Puccinia graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGTG_15149	Uncharacterized protein. (325 aa)
	PGTG_17794	Uncharacterized protein. (740 aa)
	PGTG_22134	Uncharacterized protein. (744 aa)
	PGTG_02023	Uncharacterized protein. (667 aa)
	PGTG_02025	Uncharacterized protein. (750 aa)
	PGTG_17677	Uncharacterized protein. (786 aa)
	PGTG_20891	OPT family small oligopeptide transporter. (800 aa)
	PGTG_20881	Uncharacterized protein. (519 aa)
	PGTG_14780	Uncharacterized protein. (552 aa)
	PGTG_20938	Uncharacterized protein. (334 aa)
	PGTG_20797	Uncharacterized protein. (794 aa)
	PGTG_17016	OPT family small oligopeptide transporter. (882 aa)
	PGTG_22775	Uncharacterized protein. (500 aa)
	PGTG_07635	Uncharacterized protein. (770 aa)
	PGTG_07859	Uncharacterized protein. (798 aa)
	PGTG_02671	Uncharacterized protein. (798 aa)
	PGTG_02670	Uncharacterized protein. (312 aa)
	PGTG_07855	Uncharacterized protein. (796 aa)
	PGTG_06690	Uncharacterized protein. (1088 aa)
	PGTG_02063	Uncharacterized protein. (334 aa)
	PGTG_02062	Uncharacterized protein. (117 aa)
	PGTG_02060	Uncharacterized protein. (537 aa)
	PGTG_15138	Uncharacterized protein. (234 aa)

Your Current Organism:

Puccinia graminis

NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGTG_02060	PGTG_15138	E3JX24	E3KXH7	Uncharacterized protein.	Uncharacterized protein.	0.456
PGTG_02063	PGTG_15149	E3JX27	E3KXI8	Uncharacterized protein.	Uncharacterized protein.	0.488
PGTG_02670	PGTG_15138	E3JW04	E3KXH7	Uncharacterized protein.	Uncharacterized protein.	0.495
PGTG_02670	PGTG_15149	E3JW04	E3KXI8	Uncharacterized protein.	Uncharacterized protein.	0.530
PGTG_02670	PGTG_17016	E3JW04	E3L487	Uncharacterized protein.	OPT family small oligopeptide transporter.	0.440
PGTG_02670	PGTG_20881	E3JW04	H6QPL4	Uncharacterized protein.	Uncharacterized protein.	0.466
PGTG_02670	PGTG_20938	E3JW04	H6QPU1	Uncharacterized protein.	Uncharacterized protein.	0.421
PGTG_14780	PGTG_20938	E3KWA0	H6QPU1	Uncharacterized protein.	Uncharacterized protein.	0.417
PGTG_15138	PGTG_02060	E3KXH7	E3JX24	Uncharacterized protein.	Uncharacterized protein.	0.456
PGTG_15138	PGTG_02670	E3KXH7	E3JW04	Uncharacterized protein.	Uncharacterized protein.	0.495
PGTG_15138	PGTG_15149	E3KXH7	E3KXI8	Uncharacterized protein.	Uncharacterized protein.	0.473
PGTG_15138	PGTG_20938	E3KXH7	H6QPU1	Uncharacterized protein.	Uncharacterized protein.	0.408
PGTG_15138	PGTG_22775	E3KXH7	H6QVK8	Uncharacterized protein.	Uncharacterized protein.	0.475
PGTG_15149	PGTG_02063	E3KXI8	E3JX27	Uncharacterized protein.	Uncharacterized protein.	0.488
PGTG_15149	PGTG_02670	E3KXI8	E3JW04	Uncharacterized protein.	Uncharacterized protein.	0.530
PGTG_15149	PGTG_15138	E3KXI8	E3KXH7	Uncharacterized protein.	Uncharacterized protein.	0.473
PGTG_15149	PGTG_20881	E3KXI8	H6QPL4	Uncharacterized protein.	Uncharacterized protein.	0.406
PGTG_17016	PGTG_02670	E3L487	E3JW04	OPT family small oligopeptide transporter.	Uncharacterized protein.	0.440
PGTG_17794	PGTG_20938	E3L5G9	H6QPU1	Uncharacterized protein.	Uncharacterized protein.	0.404
PGTG_20881	PGTG_02670	H6QPL4	E3JW04	Uncharacterized protein.	Uncharacterized protein.	0.466