(24 nodes) Galactose metabolism network (Puccinia graminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGTG_01888	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (896 aa)
	PGTG_05736	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily. (840 aa)
	PGTG_06082	Phosphoglucomutase; Belongs to the phosphohexose mutase family. (561 aa)
	PGTG_05910	Alpha-galactosidase. (491 aa)
	PGTG_05915	Alpha-galactosidase. (512 aa)
	PGTG_06254	UDP-glucose 4-epimerase. (456 aa)
	PGTG_07144	Alpha-galactosidase. (572 aa)
	PGTG_07938	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family. (780 aa)
	PGTG_07754	Uncharacterized protein. (392 aa)
	PGTG_07973	Galactokinase. (569 aa)
	PGTG_11040	Galactose-1-phosphate uridylyltransferase. (366 aa)
	PGTG_13901	Phosphoglucomutase. (366 aa)
	PGTG_14524	Epimerase domain-containing protein. (451 aa)
	PGTG_14781	Alpha-galactosidase. (448 aa)
	PGTG_14634	Uncharacterized protein. (497 aa)
	PGTG_17649	UTP--glucose-1-phosphate uridylyltransferase. (516 aa)
	PGTG_17913	Phosphotransferase. (443 aa)
	PGTG_18333	Phosphotransferase. (485 aa)
	PGTG_18216	Alpha-galactosidase. (319 aa)
	PGTG_20026	Phosphotransferase. (565 aa)
	PGTG_20771	Melibiase_C domain-containing protein; Belongs to the glycosyl hydrolase 27 family. (350 aa)
	PGTG_21621	Uncharacterized protein. (852 aa)
	PGTG_21618	Hexokinase. (904 aa)
	PGTG_21924	Phosphomannomutase; Belongs to the phosphohexose mutase family. (307 aa)

Your Current Organism:

Puccinia graminis

NCBI taxonomy Id: 418459
Other names: P. graminis f. sp. tritici CRL 75-36-700-3, Puccinia graminis f. sp. tritici CRL 75-36-700-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGTG_01888	PGTG_05910	E3JTH0	E3K618	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-galactosidase.	0.903
PGTG_01888	PGTG_05915	E3JTH0	E3K623	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-galactosidase.	0.903
PGTG_01888	PGTG_07144	E3JTH0	E3K9G7	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-galactosidase.	0.903
PGTG_01888	PGTG_07938	E3JTH0	E3KBJ1	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein; Belongs to the glycosyl hydrolase 32 family.	0.909
PGTG_01888	PGTG_14781	E3JTH0	E3KWA1	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-galactosidase.	0.903
PGTG_01888	PGTG_17913	E3JTH0	E3L5R1	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Phosphotransferase.	0.908
PGTG_01888	PGTG_18216	E3JTH0	E3L826	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-galactosidase.	0.903
PGTG_01888	PGTG_18333	E3JTH0	E3L723	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Phosphotransferase.	0.910
PGTG_01888	PGTG_20026	E3JTH0	E3NX67	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Phosphotransferase.	0.908
PGTG_01888	PGTG_20771	E3JTH0	H6QP59	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Melibiase_C domain-containing protein; Belongs to the glycosyl hydrolase 27 family.	0.903
PGTG_01888	PGTG_21618	E3JTH0	H6QRP7	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Hexokinase.	0.910
PGTG_01888	PGTG_21621	E3JTH0	H6QRM2	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.910
PGTG_05736	PGTG_06082	E3K4D7	E3K5I5	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Phosphoglucomutase; Belongs to the phosphohexose mutase family.	0.533
PGTG_05736	PGTG_13901	E3K4D7	E3KTA5	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Phosphoglucomutase.	0.533
PGTG_05736	PGTG_17913	E3K4D7	E3L5R1	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Phosphotransferase.	0.938
PGTG_05736	PGTG_18333	E3K4D7	E3L723	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Phosphotransferase.	0.928
PGTG_05736	PGTG_20026	E3K4D7	E3NX67	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Phosphotransferase.	0.938
PGTG_05736	PGTG_21618	E3K4D7	H6QRP7	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Hexokinase.	0.928
PGTG_05736	PGTG_21621	E3K4D7	H6QRM2	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Uncharacterized protein.	0.928
PGTG_05736	PGTG_21924	E3K4D7	H6QT44	6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily.	Phosphomannomutase; Belongs to the phosphohexose mutase family.	0.483