STRINGSTRING
IQ63_44735 IQ63_44735 luxQ_2 luxQ_2 rsbU_9 rsbU_9 rsbP_6 rsbP_6 rsbU_8 rsbU_8 vraR_4 vraR_4 yeaP yeaP IQ63_11925 IQ63_11925 yehU yehU rsbU_4 rsbU_4 rsbP_4 rsbP_4 dcuS_2 dcuS_2 rsbP_2 rsbP_2 IQ63_23945 IQ63_23945 rsbP_5 rsbP_5 cph2_1 cph2_1 rsbP_1 rsbP_1 yegE yegE dosT_3 dosT_3 IQ63_31255 IQ63_31255 luxQ_1 luxQ_1 rsbU_5 rsbU_5 IQ63_32380 IQ63_32380 devS_1 devS_1 IQ63_33770 IQ63_33770 rsbU_2 rsbU_2 IQ63_37515 IQ63_37515 IQ63_41360 IQ63_41360 liaS_16 liaS_16
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
IQ63_44735Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
luxQ_2Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1778 aa)
rsbU_9Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (868 aa)
rsbP_6PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (790 aa)
rsbU_8PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)
vraR_4Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
yeaPDiguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)
IQ63_11925Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
yehUHistidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
rsbU_4Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa)
rsbP_4PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
dcuS_2Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (862 aa)
rsbP_2PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1058 aa)
IQ63_23945Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (658 aa)
rsbP_5Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (683 aa)
cph2_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
rsbP_1Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
yegEProtein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)
dosT_3Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
IQ63_31255Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)
luxQ_1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1318 aa)
rsbU_5PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)
IQ63_32380Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
devS_1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
IQ63_33770Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
rsbU_2PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (788 aa)
IQ63_37515RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
IQ63_41360Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
liaS_16Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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