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cheR2 cheR2 rsbU_9 rsbU_9 rsbP_6 rsbP_6 rsbU_8 rsbU_8 dcuS_3 dcuS_3 gmr_2 gmr_2 yeaP yeaP IQ63_11925 IQ63_11925 dcuS_2 dcuS_2 dcuS_1 dcuS_1 rsbP_2 rsbP_2 IQ63_25905 IQ63_25905 rsbU_7 rsbU_7 IQ63_26830 IQ63_26830 IQ63_28270 IQ63_28270 rsbP_1 rsbP_1 gmr_1 gmr_1 yegE yegE rsbU_5 rsbU_5 rsbU_2 rsbU_2 walK walK rsbU_3 rsbU_3 dcuS_4 dcuS_4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cheR2Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa)
rsbU_9Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (868 aa)
rsbP_6PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (790 aa)
rsbU_8PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)
dcuS_3Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
gmr_2Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (986 aa)
yeaPDiguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)
IQ63_11925Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
dcuS_2Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (862 aa)
dcuS_1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
rsbP_2PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1058 aa)
IQ63_25905Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1583 aa)
rsbU_7PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
IQ63_26830Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
IQ63_28270Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
rsbP_1Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
gmr_1Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)
yegEProtein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)
rsbU_5PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)
rsbU_2PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (788 aa)
walKHistidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
rsbU_3PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (810 aa)
dcuS_4ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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