(16 nodes) Ras GTPase-activating protein-binding protein, and Nucleic acid binding NABP network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251RN74	Putative NTF2-like domain-containing protein. (174 aa)
	A0A251RQJ1	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein. (443 aa)
	A0A251S885	Uncharacterized protein. (546 aa)
	A0A251SLS4	Uncharacterized protein. (465 aa)
	A0A251SM20	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein. (326 aa)
	A0A251SPJ5	Putative nucleic acid binding NABP, Armadillo-type fold protein. (870 aa)
	A0A251T9S0	Putative nuclear transport factor 2, NTF2-like domain protein. (122 aa)
	A0A251TF94	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein. (322 aa)
	A0A251TGP5	Putative nuclear transport factor 2, NTF2-like domain protein. (358 aa)
	A0A251TPJ8	Putative nuclear transport factor 2. (400 aa)
	APUM3	Putative pumilio 3. (981 aa)
	A0A251UZK4	Putative nucleotide-binding alpha-beta plait domain-containing protein. (461 aa)
	A0A251VJ24	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase. (524 aa)
	A0A251VM91	Putative armadillo-like helical, Nucleic acid binding NABP, Armadillo-type fold protein. (929 aa)
	A0A251VPS6	Uncharacterized protein. (454 aa)
	A0A251VSV8	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein. (467 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251RN74	A0A251VJ24	Putative NTF2-like domain-containing protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251RQJ1	A0A251VJ24	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.691
A0A251S885	A0A251VJ24	Uncharacterized protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251SLS4	A0A251VJ24	Uncharacterized protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251SM20	A0A251TF94	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein.	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	0.461
A0A251SM20	A0A251TGP5	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein.	Putative nuclear transport factor 2, NTF2-like domain protein.	0.449
A0A251SM20	A0A251VJ24	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251T9S0	A0A251TF94	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	0.487
A0A251T9S0	A0A251TGP5	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative nuclear transport factor 2, NTF2-like domain protein.	0.478
A0A251T9S0	A0A251VJ24	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251TF94	A0A251SM20	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein.	0.461
A0A251TF94	A0A251T9S0	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	Putative nuclear transport factor 2, NTF2-like domain protein.	0.487
A0A251TF94	A0A251TPJ8	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	Putative nuclear transport factor 2.	0.468
A0A251TF94	A0A251VJ24	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251TGP5	A0A251SM20	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative nucleotide-binding alpha-beta plait domain, NTF2-like domain protein.	0.449
A0A251TGP5	A0A251T9S0	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative nuclear transport factor 2, NTF2-like domain protein.	0.478
A0A251TGP5	A0A251TPJ8	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative nuclear transport factor 2.	0.448
A0A251TGP5	A0A251VJ24	Putative nuclear transport factor 2, NTF2-like domain protein.	Putative peptidase C19, ubiquitin carboxyl-terminal hydrolase.	0.678
A0A251TPJ8	A0A251TF94	Putative nuclear transport factor 2.	Putative nuclear transport factor 2, eukaryote, NTF2-like domain protein.	0.468
A0A251TPJ8	A0A251TGP5	Putative nuclear transport factor 2.	Putative nuclear transport factor 2, NTF2-like domain protein.	0.448