(19 nodes) Mixed, incl. Caffeate O-methyltransferase activity, and Lysophospholipase activity network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251RXC1	Putative serine aminopeptidase, S33, Alpha/Beta hydrolase fold protein. (332 aa)
	4CL2	Putative 4-coumarate--CoA ligase 2. (564 aa)
	A0A251TEY8	Putative O-methyltransferase COMT-type. (149 aa)
	A0A251TF11	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (681 aa)
	A0A251TMI1	Putative serine aminopeptidase, S33, Alpha/Beta hydrolase fold protein. (233 aa)
	A0A251TQN1	Putative S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. (235 aa)
	PAL1	Phenylalanine ammonia-lyase. (702 aa)
	A0A251TW11	Putative alpha/beta-Hydrolases superfamily protein. (325 aa)
	A0A251U5T1	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (366 aa)
	COMT1-2	Putative caffeic acid 3-O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	A0A251U7E8	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	COMT2	Putative caffeic acid 3-O-methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (378 aa)
	PAL1-2	Phenylalanine ammonia-lyase. (710 aa)
	4CL2-3	Putative 4-coumarate--CoA ligase 2. (539 aa)
	LysoPL2	Putative lysophospholipase 2. (331 aa)
	A0A251UZD1	Putative alpha/beta-Hydrolases superfamily protein. (344 aa)
	COMT1-6	Putative caffeic acid 3-O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (356 aa)
	A0A251VA54	Putative AMP-dependent synthetase and ligase family protein. (573 aa)
	PALY-2	Phenylalanine ammonia-lyase. (711 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4CL2	A0A251RXC1	A0A251SME2	A0A251RXC1	Putative 4-coumarate--CoA ligase 2.	Putative serine aminopeptidase, S33, Alpha/Beta hydrolase fold protein.	0.774
4CL2	A0A251TEY8	A0A251SME2	A0A251TEY8	Putative 4-coumarate--CoA ligase 2.	Putative O-methyltransferase COMT-type.	0.826
4CL2	A0A251TF11	A0A251SME2	A0A251TF11	Putative 4-coumarate--CoA ligase 2.	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.781
4CL2	A0A251TMI1	A0A251SME2	A0A251TMI1	Putative 4-coumarate--CoA ligase 2.	Putative serine aminopeptidase, S33, Alpha/Beta hydrolase fold protein.	0.774
4CL2	A0A251TQN1	A0A251SME2	A0A251TQN1	Putative 4-coumarate--CoA ligase 2.	Putative S-adenosyl-L-methionine-dependent methyltransferases superfamily protein.	0.799
4CL2	A0A251TW11	A0A251SME2	A0A251TW11	Putative 4-coumarate--CoA ligase 2.	Putative alpha/beta-Hydrolases superfamily protein.	0.769
4CL2	A0A251U5T1	A0A251SME2	A0A251U5T1	Putative 4-coumarate--CoA ligase 2.	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.716
4CL2	A0A251U7E8	A0A251SME2	A0A251U7E8	Putative 4-coumarate--CoA ligase 2.	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.716
4CL2	A0A251UZD1	A0A251SME2	A0A251UZD1	Putative 4-coumarate--CoA ligase 2.	Putative alpha/beta-Hydrolases superfamily protein.	0.756
4CL2	COMT1-2	A0A251SME2	A0A251U6N1	Putative 4-coumarate--CoA ligase 2.	Putative caffeic acid 3-O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.781
4CL2	COMT1-6	A0A251SME2	A0A251V0A7	Putative 4-coumarate--CoA ligase 2.	Putative caffeic acid 3-O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.781
4CL2	COMT2	A0A251SME2	A0A251U8S9	Putative 4-coumarate--CoA ligase 2.	Putative caffeic acid 3-O-methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.781
4CL2	LysoPL2	A0A251SME2	A0A251UXS6	Putative 4-coumarate--CoA ligase 2.	Putative lysophospholipase 2.	0.774
4CL2	PAL1	A0A251SME2	A0A251TUG3	Putative 4-coumarate--CoA ligase 2.	Phenylalanine ammonia-lyase.	0.909
4CL2	PAL1-2	A0A251SME2	A0A251UCP2	Putative 4-coumarate--CoA ligase 2.	Phenylalanine ammonia-lyase.	0.909
4CL2	PALY-2	A0A251SME2	A0A251VH89	Putative 4-coumarate--CoA ligase 2.	Phenylalanine ammonia-lyase.	0.907
4CL2-3	A0A251RXC1	A0A251UTF5	A0A251RXC1	Putative 4-coumarate--CoA ligase 2.	Putative serine aminopeptidase, S33, Alpha/Beta hydrolase fold protein.	0.752
4CL2-3	A0A251TEY8	A0A251UTF5	A0A251TEY8	Putative 4-coumarate--CoA ligase 2.	Putative O-methyltransferase COMT-type.	0.753
4CL2-3	A0A251TF11	A0A251UTF5	A0A251TF11	Putative 4-coumarate--CoA ligase 2.	Putative O-methyltransferase COMT-type, S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.733
4CL2-3	A0A251TMI1	A0A251UTF5	A0A251TMI1	Putative 4-coumarate--CoA ligase 2.	Putative serine aminopeptidase, S33, Alpha/Beta hydrolase fold protein.	0.752