(18 nodes) Integral component of chloroplast outer membrane network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKR2B	Putative ankyrin repeat-containing 2B. (347 aa)
	A0A251SCP4	Uncharacterized protein. (188 aa)
	A0A251SDK0	Uncharacterized protein. (187 aa)
	A0A251SDM3	Uncharacterized protein. (109 aa)
	A0A251SPR1	Putative import inner membrane translocase subunit Tim17/Tim22/Tim23 family. (176 aa)
	A0A251SSF4	Protein kinase domain-containing protein. (626 aa)
	A0A251TIV4	STI1 domain-containing protein. (516 aa)
	A0A251TJE4	Putative ankyrin repeat-containing domain-containing protein. (353 aa)
	A0A251TKL4	Uncharacterized protein. (317 aa)
	A0A251TL09	Putative serine-threonine/tyrosine-protein kinase catalytic domain-containing protein. (625 aa)
	PDV2	Putative plastid division2. (259 aa)
	A0A251TW01	Putative ankyrin repeat-containing domain-containing protein. (352 aa)
	OEP21	Putative outer envelope pore protein 21 protein. (195 aa)
	TOC64	Putative translocon at the outer membrane of chloroplasts 64. (620 aa)
	TOC75	Bac_surface_Ag domain-containing protein. (802 aa)
	A0A251V656	Putative ankyrin repeat-containing domain-containing protein. (353 aa)
	OEP37	Putative outer envelope pore protein 37 protein. (340 aa)
	TOC75-III	Putative translocon at the outer envelope membrane of chloroplasts 75-III. (802 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251SPR1	OEP37	A0A251SPR1	A0A251VDZ0	Putative import inner membrane translocase subunit Tim17/Tim22/Tim23 family.	Putative outer envelope pore protein 37 protein.	0.507
OEP37	A0A251SPR1	A0A251VDZ0	A0A251SPR1	Putative outer envelope pore protein 37 protein.	Putative import inner membrane translocase subunit Tim17/Tim22/Tim23 family.	0.507
OEP37	TOC75	A0A251VDZ0	A0A251UZ04	Putative outer envelope pore protein 37 protein.	Bac_surface_Ag domain-containing protein.	0.412
OEP37	TOC75-III	A0A251VDZ0	A0A251VM95	Putative outer envelope pore protein 37 protein.	Putative translocon at the outer envelope membrane of chloroplasts 75-III.	0.412
TOC75	OEP37	A0A251UZ04	A0A251VDZ0	Bac_surface_Ag domain-containing protein.	Putative outer envelope pore protein 37 protein.	0.412
TOC75	TOC75-III	A0A251UZ04	A0A251VM95	Bac_surface_Ag domain-containing protein.	Putative translocon at the outer envelope membrane of chloroplasts 75-III.	0.543
TOC75-III	OEP37	A0A251VM95	A0A251VDZ0	Putative translocon at the outer envelope membrane of chloroplasts 75-III.	Putative outer envelope pore protein 37 protein.	0.412
TOC75-III	TOC75	A0A251VM95	A0A251UZ04	Putative translocon at the outer envelope membrane of chloroplasts 75-III.	Bac_surface_Ag domain-containing protein.	0.543