(21 nodes) (2012) AP2ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots. network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3-2	Histone H3; Belongs to the histone H3 family. (133 aa)
	A0A251US63	Putative histone H3/CENP-A. (133 aa)
	A0A251V082	Histone H3; Belongs to the histone H3 family. (136 aa)
	PTI6	Putative pathogenesis-related transcriptional activator PTI6. (267 aa)
	A0A251VBX2	Histone H3; Belongs to the histone H3 family. (136 aa)
	ERF3-2	Putative ethylene-responsive transcription factor 3. (215 aa)
	A0A251S9Y5	Histone H3; Belongs to the histone H3 family. (136 aa)
	H33	Putative histone H3.3. (143 aa)
	A0A251SAQ0	Putative histone H3/CENP-A. (213 aa)
	CHR5	Putative chromatin remodeling 5. (1683 aa)
	H33-2	Putative histone H3.3. (146 aa)
	A0A251SSA9	Histone H3; Belongs to the histone H3 family. (136 aa)
	ATERF-1	Putative ethylene responsive element binding factor 1. (228 aa)
	A0A251T4W7	Histone H3; Belongs to the histone H3 family. (147 aa)
	A0A251TEH2	Histone H3; Belongs to the histone H3 family. (140 aa)
	LBD16	Putative lateral organ boundaries-domain 16. (206 aa)
	CHR9	Putative switch 2. (834 aa)
	CHR8	Putative chromatin remodeling 8. (1192 aa)
	ERF3	Putative ethylene-responsive transcription factor 3. (217 aa)
	H32	Putative histone H3 type 2. (133 aa)
	H3	Putative histone H3. (133 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATERF-1	CHR9	A0A251SW60	A0A251TG57	Putative ethylene responsive element binding factor 1.	Putative switch 2.	0.461
ATERF-1	LBD16	A0A251SW60	A0A251TFE2	Putative ethylene responsive element binding factor 1.	Putative lateral organ boundaries-domain 16.	0.470
CHR5	CHR8	A0A251SG91	A0A251TII8	Putative chromatin remodeling 5.	Putative chromatin remodeling 8.	0.440
CHR5	CHR9	A0A251SG91	A0A251TG57	Putative chromatin remodeling 5.	Putative switch 2.	0.409
CHR5	LBD16	A0A251SG91	A0A251TFE2	Putative chromatin remodeling 5.	Putative lateral organ boundaries-domain 16.	0.482
CHR5	PTI6	A0A251SG91	A0A251VMS9	Putative chromatin remodeling 5.	Putative pathogenesis-related transcriptional activator PTI6.	0.469
CHR8	CHR5	A0A251TII8	A0A251SG91	Putative chromatin remodeling 8.	Putative chromatin remodeling 5.	0.440
CHR8	LBD16	A0A251TII8	A0A251TFE2	Putative chromatin remodeling 8.	Putative lateral organ boundaries-domain 16.	0.517
CHR8	PTI6	A0A251TII8	A0A251VMS9	Putative chromatin remodeling 8.	Putative pathogenesis-related transcriptional activator PTI6.	0.493
CHR9	ATERF-1	A0A251TG57	A0A251SW60	Putative switch 2.	Putative ethylene responsive element binding factor 1.	0.461
CHR9	CHR5	A0A251TG57	A0A251SG91	Putative switch 2.	Putative chromatin remodeling 5.	0.409
CHR9	LBD16	A0A251TG57	A0A251TFE2	Putative switch 2.	Putative lateral organ boundaries-domain 16.	0.540
CHR9	PTI6	A0A251TG57	A0A251VMS9	Putative switch 2.	Putative pathogenesis-related transcriptional activator PTI6.	0.497
ERF3	LBD16	A0A251TMZ4	A0A251TFE2	Putative ethylene-responsive transcription factor 3.	Putative lateral organ boundaries-domain 16.	0.463
ERF3-2	LBD16	A0A251V931	A0A251TFE2	Putative ethylene-responsive transcription factor 3.	Putative lateral organ boundaries-domain 16.	0.463
LBD16	ATERF-1	A0A251TFE2	A0A251SW60	Putative lateral organ boundaries-domain 16.	Putative ethylene responsive element binding factor 1.	0.470
LBD16	CHR5	A0A251TFE2	A0A251SG91	Putative lateral organ boundaries-domain 16.	Putative chromatin remodeling 5.	0.482
LBD16	CHR8	A0A251TFE2	A0A251TII8	Putative lateral organ boundaries-domain 16.	Putative chromatin remodeling 8.	0.517
LBD16	CHR9	A0A251TFE2	A0A251TG57	Putative lateral organ boundaries-domain 16.	Putative switch 2.	0.540
LBD16	ERF3	A0A251TFE2	A0A251TMZ4	Putative lateral organ boundaries-domain 16.	Putative ethylene-responsive transcription factor 3.	0.463