(27 nodes) (2015) Transcriptome Analysis and Development of SSR Molecular Markers in Glycyrrhiza uralensis Fisch. network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251U3C3	3-hydroxy-3-methylglutaryl coenzyme A reductase. (590 aa)
	HMDH2	3-hydroxy-3-methylglutaryl coenzyme A reductase. (559 aa)
	HMDH	3-hydroxy-3-methylglutaryl coenzyme A reductase. (517 aa)
	A0A251S003	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase. (471 aa)
	HMDH1	3-hydroxy-3-methylglutaryl coenzyme A reductase. (595 aa)
	HMDH2-2	3-hydroxy-3-methylglutaryl coenzyme A reductase. (597 aa)
	A0A251SDL7	Putative polyprenyl synthetase-related protein; Belongs to the FPP/GGPP synthase family. (336 aa)
	GGPPS	Putative geranylgeranyl pyrophosphate synthase, chloroplastic; Belongs to the FPP/GGPP synthase family. (361 aa)
	GGR	Putative geranylgeranyl reductase; Belongs to the FPP/GGPP synthase family. (334 aa)
	A0A251TU98	Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. (305 aa)
	A0A251TUX7	3-hydroxy-3-methylglutaryl coenzyme A reductase. (572 aa)
	MVK	Mevalonate kinase. (387 aa)
	IDI1	Putative isopentenyl-diphosphate Delta-isomerase I. (295 aa)
	DXR	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase. (474 aa)
	A0A251U2J5	Putative polyprenyl synthetase-related protein; Belongs to the FPP/GGPP synthase family. (352 aa)
	A0A251U507	Putative polyprenyl synthetase-related protein; Belongs to the FPP/GGPP synthase family. (332 aa)
	FPPS	Putative farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (382 aa)
	HIS5	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family. (582 aa)
	A0A251UHF7	Putative phosphomevalonate kinase, ERG8. (489 aa)
	ISPD	Putative nucleotide-diphospho-sugar transferases superfamily protein. (302 aa)
	DXR-2	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase. (472 aa)
	FPPS1	Putative farnesyl pyrophosphate synthase 1; Belongs to the FPP/GGPP synthase family. (358 aa)
	GGPPS-2	Putative geranylgeranyl pyrophosphate synthase, chloroplastic; Belongs to the FPP/GGPP synthase family. (364 aa)
	IDI2	Putative isopentenyl-diphosphate Delta-isomerase II. (272 aa)
	AT-HF	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family. (582 aa)
	GPPS	Putative geranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family. (412 aa)
	A0A251V7C8	Putative isoprenoid synthase domain, Polyprenyl synthetase-related protein. (295 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251S003	A0A251SDL7	A0A251S003	A0A251SDL7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative polyprenyl synthetase-related protein; Belongs to the FPP/GGPP synthase family.	0.698
A0A251S003	A0A251TU98	A0A251S003	A0A251TU98	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.	0.984
A0A251S003	A0A251TUX7	A0A251S003	A0A251TUX7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.486
A0A251S003	A0A251U2J5	A0A251S003	A0A251U2J5	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative polyprenyl synthetase-related protein; Belongs to the FPP/GGPP synthase family.	0.698
A0A251S003	A0A251U3C3	A0A251S003	A0A251U3C3	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.487
A0A251S003	A0A251U507	A0A251S003	A0A251U507	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative polyprenyl synthetase-related protein; Belongs to the FPP/GGPP synthase family.	0.698
A0A251S003	A0A251UHF7	A0A251S003	A0A251UHF7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative phosphomevalonate kinase, ERG8.	0.778
A0A251S003	A0A251V7C8	A0A251S003	A0A251V7C8	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative isoprenoid synthase domain, Polyprenyl synthetase-related protein.	0.698
A0A251S003	AT-HF	A0A251S003	A0A251UUP7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	0.493
A0A251S003	DXR	A0A251S003	A0A251U019	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	0.901
A0A251S003	DXR-2	A0A251S003	A0A251USF8	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	0.901
A0A251S003	FPPS	A0A251S003	A0A251U7H3	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.516
A0A251S003	FPPS1	A0A251S003	A0A251UT80	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative farnesyl pyrophosphate synthase 1; Belongs to the FPP/GGPP synthase family.	0.554
A0A251S003	GGPPS	A0A251S003	A0A251T3N1	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative geranylgeranyl pyrophosphate synthase, chloroplastic; Belongs to the FPP/GGPP synthase family.	0.497
A0A251S003	GGPPS-2	A0A251S003	A0A251UTT7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative geranylgeranyl pyrophosphate synthase, chloroplastic; Belongs to the FPP/GGPP synthase family.	0.497
A0A251S003	GGR	A0A251S003	A0A251TJJ9	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative geranylgeranyl reductase; Belongs to the FPP/GGPP synthase family.	0.698
A0A251S003	GPPS	A0A251S003	A0A251V4B7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Putative geranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.	0.622
A0A251S003	HIS5	A0A251S003	A0A251U7S9	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	0.493
A0A251S003	HMDH	A0A251S003	A0A251RS13	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.487
A0A251S003	HMDH1	A0A251S003	A0A251S4J7	Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.487