(12 nodes) (2016) Anti-hyperglycaemic and antioxidant effects of Bidens tripartita and quantitative analysis on its active principles. network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMYA	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (428 aa)
	A0A251VHZ1	Putative glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family. (885 aa)
	A0A251VHQ8	Putative glycosyl hydrolases family 31 protein; Belongs to the glycosyl hydrolase 31 family. (884 aa)
	A0A251V019	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (985 aa)
	PHSL1	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (955 aa)
	A0A251SJD7	Putative trehalose synthase/alpha-amylase. (650 aa)
	PHSL2	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (916 aa)
	A0A251THX1	Putative NAD(P)-linked oxidoreductase superfamily protein. (322 aa)
	ATAMY2	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (411 aa)
	ATAMY3	Alpha-amylase. (874 aa)
	PHSH	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (844 aa)
	AMY1	Alpha-amylase. (348 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251SJD7	A0A251THX1	A0A251SJD7	A0A251THX1	Putative trehalose synthase/alpha-amylase.	Putative NAD(P)-linked oxidoreductase superfamily protein.	0.702
A0A251SJD7	A0A251V019	A0A251SJD7	A0A251V019	Putative trehalose synthase/alpha-amylase.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.930
A0A251SJD7	A0A251VHQ8	A0A251SJD7	A0A251VHQ8	Putative trehalose synthase/alpha-amylase.	Putative glycosyl hydrolases family 31 protein; Belongs to the glycosyl hydrolase 31 family.	0.981
A0A251SJD7	A0A251VHZ1	A0A251SJD7	A0A251VHZ1	Putative trehalose synthase/alpha-amylase.	Putative glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family.	0.981
A0A251SJD7	PHSH	A0A251SJD7	A0A251UMQ2	Putative trehalose synthase/alpha-amylase.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.944
A0A251SJD7	PHSL1	A0A251SJD7	A0A251RNZ4	Putative trehalose synthase/alpha-amylase.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.937
A0A251SJD7	PHSL2	A0A251SJD7	A0A251T1W8	Putative trehalose synthase/alpha-amylase.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.937
A0A251THX1	A0A251SJD7	A0A251THX1	A0A251SJD7	Putative NAD(P)-linked oxidoreductase superfamily protein.	Putative trehalose synthase/alpha-amylase.	0.702
A0A251THX1	A0A251V019	A0A251THX1	A0A251V019	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.649
A0A251THX1	A0A251VHQ8	A0A251THX1	A0A251VHQ8	Putative NAD(P)-linked oxidoreductase superfamily protein.	Putative glycosyl hydrolases family 31 protein; Belongs to the glycosyl hydrolase 31 family.	0.841
A0A251THX1	A0A251VHZ1	A0A251THX1	A0A251VHZ1	Putative NAD(P)-linked oxidoreductase superfamily protein.	Putative glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family.	0.841
A0A251THX1	AMY1	A0A251THX1	A0A251USJ9	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-amylase.	0.702
A0A251THX1	AMYA	A0A251THX1	A0A251URT2	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.	0.702
A0A251THX1	ATAMY2	A0A251THX1	A0A251U3V5	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.	0.702
A0A251THX1	ATAMY3	A0A251THX1	A0A251UAG6	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-amylase.	0.702
A0A251THX1	PHSH	A0A251THX1	A0A251UMQ2	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.650
A0A251THX1	PHSL1	A0A251THX1	A0A251RNZ4	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.649
A0A251THX1	PHSL2	A0A251THX1	A0A251T1W8	Putative NAD(P)-linked oxidoreductase superfamily protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.649
A0A251V019	A0A251SJD7	A0A251V019	A0A251SJD7	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Putative trehalose synthase/alpha-amylase.	0.930
A0A251V019	A0A251THX1	A0A251V019	A0A251THX1	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Putative NAD(P)-linked oxidoreductase superfamily protein.	0.649