(13 nodes) Glycosphingolipid biosynthesis - globo and isoglobo series network (Helianthus annuus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AtAGAL1	Alpha-galactosidase. (402 aa)
	HEX1	Beta-hexosaminidase. (578 aa)
	A0A251RWM2	Putative glycosyltransferase, DXD sugar-binding motif protein. (423 aa)
	A0A251S082	Putative glycosyltransferase, DXD sugar-binding motif protein. (457 aa)
	A0A251S491	Putative glycosyltransferase, DXD sugar-binding motif protein. (383 aa)
	A0A251SCZ8	Alpha-galactosidase. (428 aa)
	HEXO3	Beta-hexosaminidase. (497 aa)
	A0A251SSL6	Putative alpha 1,4-glycosyltransferase family protein. (416 aa)
	AGAL	Alpha-galactosidase. (416 aa)
	HEXO2	Beta-hexosaminidase. (580 aa)
	A0A251TKJ9	Putative glycosyltransferase, DXD sugar-binding motif protein. (420 aa)
	HEXO1	Beta-hexosaminidase. (556 aa)
	A0A251V3P8	Putative glycosyltransferase, DXD sugar-binding motif protein. (430 aa)

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251RWM2	A0A251S082	A0A251RWM2	A0A251S082	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.901
A0A251RWM2	A0A251S491	A0A251RWM2	A0A251S491	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.904
A0A251RWM2	A0A251SCZ8	A0A251RWM2	A0A251SCZ8	Putative glycosyltransferase, DXD sugar-binding motif protein.	Alpha-galactosidase.	0.900
A0A251RWM2	A0A251SSL6	A0A251RWM2	A0A251SSL6	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative alpha 1,4-glycosyltransferase family protein.	0.904
A0A251RWM2	A0A251TKJ9	A0A251RWM2	A0A251TKJ9	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.905
A0A251RWM2	A0A251V3P8	A0A251RWM2	A0A251V3P8	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.902
A0A251RWM2	AGAL	A0A251RWM2	A0A251T7I8	Putative glycosyltransferase, DXD sugar-binding motif protein.	Alpha-galactosidase.	0.900
A0A251RWM2	AtAGAL1	A0A251RWM2	A0A251RNR9	Putative glycosyltransferase, DXD sugar-binding motif protein.	Alpha-galactosidase.	0.900
A0A251RWM2	HEX1	A0A251RWM2	A0A251RUV0	Putative glycosyltransferase, DXD sugar-binding motif protein.	Beta-hexosaminidase.	0.650
A0A251RWM2	HEXO1	A0A251RWM2	A0A251TTP9	Putative glycosyltransferase, DXD sugar-binding motif protein.	Beta-hexosaminidase.	0.650
A0A251RWM2	HEXO2	A0A251RWM2	A0A251T9P0	Putative glycosyltransferase, DXD sugar-binding motif protein.	Beta-hexosaminidase.	0.650
A0A251RWM2	HEXO3	A0A251RWM2	A0A251SL68	Putative glycosyltransferase, DXD sugar-binding motif protein.	Beta-hexosaminidase.	0.650
A0A251S082	A0A251RWM2	A0A251S082	A0A251RWM2	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.901
A0A251S082	A0A251S491	A0A251S082	A0A251S491	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.904
A0A251S082	A0A251SCZ8	A0A251S082	A0A251SCZ8	Putative glycosyltransferase, DXD sugar-binding motif protein.	Alpha-galactosidase.	0.900
A0A251S082	A0A251SSL6	A0A251S082	A0A251SSL6	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative alpha 1,4-glycosyltransferase family protein.	0.904
A0A251S082	A0A251TKJ9	A0A251S082	A0A251TKJ9	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.904
A0A251S082	A0A251V3P8	A0A251S082	A0A251V3P8	Putative glycosyltransferase, DXD sugar-binding motif protein.	Putative glycosyltransferase, DXD sugar-binding motif protein.	0.902
A0A251S082	AGAL	A0A251S082	A0A251T7I8	Putative glycosyltransferase, DXD sugar-binding motif protein.	Alpha-galactosidase.	0.900
A0A251S082	AtAGAL1	A0A251S082	A0A251RNR9	Putative glycosyltransferase, DXD sugar-binding motif protein.	Alpha-galactosidase.	0.900