(62 nodes) Pollen tube network (Phoenix dactylifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103698717	Uncharacterized protein LOC103698717 isoform X1. (472 aa)
	LOC103699099	LOW QUALITY PROTEIN: probable inactive leucine-rich repeat receptor kinase XIAO; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1176 aa)
	LOC103699424	Uncharacterized protein LOC103699424. (216 aa)
	LOC103700566	Phosphatidylinositol 4-phosphate 5-kinase 6-like. (245 aa)
	LOC103701268	F-box protein 7 isoform X1. (326 aa)
	LOC103702346	GPI-anchored protein LLG1. (162 aa)
	LOC103702874	Probable serine/threonine-protein kinase PBL26 isoform X1; Belongs to the protein kinase superfamily. (426 aa)
	LOC103703030	Uncharacterized protein LOC103703030. (443 aa)
	LOC103703660	Sugar transport protein 7; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (517 aa)
	LOC103704454	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (534 aa)
	LOC103705560	ABC transporter G family member 28-like. (1098 aa)
	LOC103706148	Uncharacterized protein LOC103706148. (634 aa)
	LOC103706338	Uncharacterized protein LOC103706338. (640 aa)
	LOC103707329	LOW QUALITY PROTEIN: protein MALE DISCOVERER 2-like. (704 aa)
	LOC103708286	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity. (186 aa)
	LOC103709258	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (534 aa)
	LOC103709860	Probable serine/threonine-protein kinase PBL25; Belongs to the protein kinase superfamily. (436 aa)
	LOC103710254	Protein RALF-like 22. (125 aa)
	LOC103710645	High mobility group B protein 15-like. (329 aa)
	LOC103711683	Probable aquaporin TIP5-1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (254 aa)
	LOC103711908	MDIS1-interacting receptor like kinase 1-like; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1029 aa)
	LOC103711975	GPI-anchored protein LLG1-like. (176 aa)
	LOC103712359	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity. (298 aa)
	LOC103713110	UDP-sugar pyrophosphorylase. (621 aa)
	LOC103716251	Sucrose transport protein SUT4-like isoform X5. (605 aa)
	LOC103716560	Probable aquaporin TIP5-1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (259 aa)
	LOC103716981	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1230 aa)
	LOC103717153	Septum-promoting GTP-binding protein 1-like. (271 aa)
	LOC103718174	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (534 aa)
	LOC103718269	Mannosyltransferase. (556 aa)
	LOC103718467	GPI-anchored protein LLG1-like. (250 aa)
	LOC103719224	Uncharacterized protein LOC103719224 isoform X1. (485 aa)
	LOC103720486	LOW QUALITY PROTEIN: transcription factor MYB97. (486 aa)
	LOC103720511	MDIS1-interacting receptor like kinase 1-like; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (996 aa)
	LOC103720617	LOW QUALITY PROTEIN: uncharacterized protein LOC103720617. (637 aa)
	LOC103721560	Receptor protein kinase-like protein ZAR1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (712 aa)
	LOC103722471	Interactor of constitutive active ROPs 1. (400 aa)
	LOC103722830	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (721 aa)
	LOC103723104	Septum-promoting GTP-binding protein 1-like isoform X1. (271 aa)
	LOC103724208	High mobility group B protein 15-like. (473 aa)
	LOC103720079	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity. (298 aa)
	LOC103695708	LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNL2. (2210 aa)
	LOC103695785	Transcription factor MYB101-like. (332 aa)
	LOC103696018	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (360 aa)
	LOC103696081	Uncharacterized protein LOC103696081. (337 aa)
	LOC103696855	ABC transporter G family member 28-like. (579 aa)
	LOC103698077	Sucrose transport protein SUT4-like isoform X1. (606 aa)
	LOC113463416	Transcription factor MYB97-like. (214 aa)
	LOC103714551	ABC transporter G family member 28. (495 aa)
	LOC103719987	Mannosyltransferase. (581 aa)
	LOC103716982	DEAD-box ATP-dependent RNA helicase 36 isoform X1; Belongs to the DEAD box helicase family. (604 aa)
	LOC103706885	Protein MALE DISCOVERER 2-like isoform X1. (721 aa)
	LOC103708604	Rapid alkalinization factor-like. (128 aa)
	LOC103709453	LOW QUALITY PROTEIN: interactor of constitutive active ROPs 4-like. (417 aa)
	LOC103716920	Phosphatidylinositol 4-phosphate 5-kinase. (812 aa)
	LOC103722084	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (719 aa)
	LOC113461331	Phosphatidylinositol 4-phosphate 5-kinase 6-like. (128 aa)
	LOC103698415	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (680 aa)
	LOC103700930	LOW QUALITY PROTEIN: uncharacterized protein LOC103700930. (632 aa)
	LOC103697941	High mobility group B protein 15-like isoform X1. (495 aa)
	LOC103701723	Phosphatidylinositol 4-phosphate 5-kinase. (762 aa)
	LOC103717629	Uncharacterized protein LOC103717629. (200 aa)

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103695708	LOC103717153	A0A2H3WXT9	A0A2H3YTP1	LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNL2.	Septum-promoting GTP-binding protein 1-like.	0.409
LOC103695708	LOC103723104	A0A2H3WXT9	A0A2H3ZDI1	LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNL2.	Septum-promoting GTP-binding protein 1-like isoform X1.	0.409
LOC103696855	LOC103714551	A0A2H3X196	A0A3Q0ID26	ABC transporter G family member 28-like.	ABC transporter G family member 28.	0.458
LOC103697941	LOC103710645	A0A3Q0HUR4	A0A2H3Y7P2	High mobility group B protein 15-like isoform X1.	High mobility group B protein 15-like.	0.759
LOC103697941	LOC103724208	A0A3Q0HUR4	A0A2H3ZGU3	High mobility group B protein 15-like isoform X1.	High mobility group B protein 15-like.	0.753
LOC103700566	LOC113461331	A0A2H3XA99	A0A3Q0HQR5	Phosphatidylinositol 4-phosphate 5-kinase 6-like.	Phosphatidylinositol 4-phosphate 5-kinase 6-like.	0.478
LOC103708286	LOC103712359	A0A2H3Y077	A0A2H3YDF1	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.900
LOC103708286	LOC103720079	A0A2H3Y077	A0A2H3ZJW5	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.900
LOC103710645	LOC103697941	A0A2H3Y7P2	A0A3Q0HUR4	High mobility group B protein 15-like.	High mobility group B protein 15-like isoform X1.	0.759
LOC103710645	LOC103724208	A0A2H3Y7P2	A0A2H3ZGU3	High mobility group B protein 15-like.	High mobility group B protein 15-like.	0.759
LOC103712359	LOC103708286	A0A2H3YDF1	A0A2H3Y077	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.900
LOC103712359	LOC103720079	A0A2H3YDF1	A0A2H3ZJW5	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.900
LOC103714551	LOC103696855	A0A3Q0ID26	A0A2H3X196	ABC transporter G family member 28.	ABC transporter G family member 28-like.	0.458
LOC103717153	LOC103695708	A0A2H3YTP1	A0A2H3WXT9	Septum-promoting GTP-binding protein 1-like.	LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNL2.	0.409
LOC103718269	LOC103719987	A0A2H3YXS0	A0A3Q0IEW4	Mannosyltransferase.	Mannosyltransferase.	0.901
LOC103719987	LOC103718269	A0A3Q0IEW4	A0A2H3YXS0	Mannosyltransferase.	Mannosyltransferase.	0.901
LOC103720079	LOC103708286	A0A2H3ZJW5	A0A2H3Y077	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.900
LOC103720079	LOC103712359	A0A2H3ZJW5	A0A2H3YDF1	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.900
LOC103723104	LOC103695708	A0A2H3ZDI1	A0A2H3WXT9	Septum-promoting GTP-binding protein 1-like isoform X1.	LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNL2.	0.409
LOC103724208	LOC103697941	A0A2H3ZGU3	A0A3Q0HUR4	High mobility group B protein 15-like.	High mobility group B protein 15-like isoform X1.	0.753