STRINGSTRING
Ssed_1031 Ssed_1031 Ssed_1032 Ssed_1032 Ssed_3280 Ssed_3280 Ssed_3281 Ssed_3281 Ssed_4408 Ssed_4408 Ssed_4409 Ssed_4409
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_1031KEGG: hch:HCH_06918 signal transduction histidine kinase. (431 aa)
Ssed_1032KEGG: hch:HCH_06917 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (232 aa)
Ssed_3280KEGG: cps:CPS_3065 DNA-binding response regulator. (228 aa)
Ssed_3281KEGG: cps:CPS_3066 sensor histidine kinase. (483 aa)
Ssed_4408KEGG: slo:Shew_0081 two component transcriptional regulator, winged helix family. (242 aa)
Ssed_4409KEGG: slo:Shew_0080 integral membrane sensor signal transduction histidine kinase. (427 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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