STRINGSTRING
Ssed_0046 Ssed_0046 Ssed_0257 Ssed_0257 Ssed_0539 Ssed_0539 Ssed_1023 Ssed_1023 Ssed_1116 Ssed_1116 Ssed_1520 Ssed_1520 Ssed_1633 Ssed_1633 Ssed_1968 Ssed_1968 Ssed_2045 Ssed_2045 Ssed_2254 Ssed_2254 Ssed_2631 Ssed_2631 Ssed_3217 Ssed_3217 Ssed_3784 Ssed_3784 Ssed_4146 Ssed_4146 Ssed_4169 Ssed_4169
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0046KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). (836 aa)
Ssed_0257KEGG: slo:Shew_3585 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (703 aa)
Ssed_0539KEGG: slo:Shew_0384 diguanylate cyclase/phosphodiesterase. (636 aa)
Ssed_1023KEGG: slo:Shew_0951 response regulator receiver modulated diguanylate phosphodiesterase. (399 aa)
Ssed_1116KEGG: vfi:VFA0056 hypothetical protein. (435 aa)
Ssed_1520KEGG: saz:Sama_1202 GGDEF domain-like protein. (323 aa)
Ssed_1633KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1447 aa)
Ssed_1968KEGG: shm:Shewmr7_1862 diguanylate phosphodiesterase. (231 aa)
Ssed_2045KEGG: shn:Shewana3_2167 diguanylate cyclase/phosphodiesterase. (632 aa)
Ssed_2254KEGG: cps:CPS_1325 sensory box/GGDEF domain protein. (422 aa)
Ssed_2631KEGG: slo:Shew_1596 diguanylate cyclase with PAS/PAC sensor. (467 aa)
Ssed_3217KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein. (951 aa)
Ssed_3784KEGG: pca:Pcar_0095 putative sensory transduction system, regulatory protein. (549 aa)
Ssed_4146KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor. (875 aa)
Ssed_4169KEGG: slo:Shew_0285 diguanylate cyclase. (267 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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