STRINGSTRING
Ssed_0152 Ssed_0152 Ssed_0153 Ssed_0153 Ssed_0210 Ssed_0210 Ssed_0211 Ssed_0211 Ssed_0212 Ssed_0212 Ssed_0629 Ssed_0629 Ssed_0630 Ssed_0630 Ssed_0774 Ssed_0774 Ssed_0888 Ssed_0888 Ssed_0889 Ssed_0889 Ssed_1255 Ssed_1255 Ssed_1256 Ssed_1256 Ssed_1266 Ssed_1266 Ssed_1267 Ssed_1267 Ssed_1372 Ssed_1372 Ssed_1373 Ssed_1373 Ssed_1971 Ssed_1971 Ssed_1972 Ssed_1972 Ssed_1973 Ssed_1973 Ssed_1974 Ssed_1974 Ssed_1975 Ssed_1975 Ssed_1976 Ssed_1976 Ssed_1977 Ssed_1977 Ssed_1978 Ssed_1978 Ssed_2166 Ssed_2166 Ssed_2167 Ssed_2167 Ssed_2283 Ssed_2283 Ssed_2284 Ssed_2284 Ssed_2285 Ssed_2285 Ssed_2427 Ssed_2427 Ssed_2428 Ssed_2428 Ssed_2820 Ssed_2820 Ssed_2821 Ssed_2821 Ssed_2822 Ssed_2822 Ssed_2823 Ssed_2823 Ssed_2915 Ssed_2915 Ssed_2916 Ssed_2916 Ssed_2917 Ssed_2917 Ssed_3111 Ssed_3111 Ssed_3112 Ssed_3112 Ssed_3113 Ssed_3113 Ssed_3212 Ssed_3212 Ssed_3213 Ssed_3213 Ssed_3214 Ssed_3214 Ssed_3868 Ssed_3868 Ssed_3869 Ssed_3869 Ssed_3870 Ssed_3870 Ssed_3991 Ssed_3991 Ssed_3992 Ssed_3992 Ssed_3993 Ssed_3993 Ssed_3994 Ssed_3994 Ssed_4081 Ssed_4081 Ssed_4082 Ssed_4082 Ssed_4083 Ssed_4083 Ssed_4148 Ssed_4148 Ssed_4149 Ssed_4149 Ssed_4150 Ssed_4150 Ssed_4375 Ssed_4375 Ssed_4376 Ssed_4376
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0152KEGG: slo:Shew_0031 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (385 aa)
Ssed_0153KEGG: slo:Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family. (1050 aa)
Ssed_0210KEGG: slo:Shew_3534 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)
Ssed_0211Membrane-fusion protein-like protein; KEGG: slo:Shew_3535 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (650 aa)
Ssed_0212KEGG: slo:Shew_3536 hypothetical protein. (192 aa)
Ssed_0629KEGG: slo:Shew_0466 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1028 aa)
Ssed_0630KEGG: slo:Shew_0467 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (364 aa)
Ssed_0774KEGG: slo:Shew_0544 type I secretion outer membrane protein, TolC family. (441 aa)
Ssed_0888KEGG: slo:Shew_0765 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1055 aa)
Ssed_0889KEGG: slo:Shew_0766 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (405 aa)
Ssed_1255KEGG: slo:Shew_1163 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)
Ssed_1256KEGG: slo:Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family. (1038 aa)
Ssed_1266KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (371 aa)
Ssed_1267KEGG: spc:Sputcn32_2787 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1035 aa)
Ssed_1372Membrane-fusion protein-like protein; KEGG: rle:RL3775 putative HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (354 aa)
Ssed_1373KEGG: slo:Shew_3796 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family. (1045 aa)
Ssed_1971KEGG: lpf:lpl0800 hypothetical protein. (270 aa)
Ssed_1972KEGG: lpp:lpp0199 hypothetical protein. (88 aa)
Ssed_1973KEGG: pat:Patl_2252 histidine kinase. (422 aa)
Ssed_1974KEGG: sfr:Sfri_3676 two component transcriptional regulator, winged helix family protein. (223 aa)
Ssed_1975KEGG: pat:Patl_3597 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1062 aa)
Ssed_1976KEGG: sfr:Sfri_3678 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (412 aa)
Ssed_1977KEGG: sfr:Sfri_3679 RND efflux system, outer membrane lipoprotein, NodT family protein. (465 aa)
Ssed_1978KEGG: sbl:Sbal_1230 hypothetical protein. (104 aa)
Ssed_2166KEGG: slo:Shew_2011 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1060 aa)
Ssed_2167KEGG: sfr:Sfri_1930 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (396 aa)
Ssed_2283KEGG: shn:Shewana3_1994 outer membrane efflux protein. (501 aa)
Ssed_2284KEGG: shn:Shewana3_1993 acriflavin resistance protein. (1055 aa)
Ssed_2285KEGG: she:Shewmr4_1939 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (428 aa)
Ssed_2427KEGG: slo:Shew_1852 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1031 aa)
Ssed_2428KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (361 aa)
Ssed_2820KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (363 aa)
Ssed_2821KEGG: slo:Shew_1648 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1087 aa)
Ssed_2822KEGG: slo:Shew_1647 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1027 aa)
Ssed_2823KEGG: slo:Shew_1646 beta-lactamase domain protein. (287 aa)
Ssed_2915KEGG: slo:Shew_3565 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1035 aa)
Ssed_2916KEGG: slo:Shew_3566 efflux transporter, RND family, MFP subunit. (449 aa)
Ssed_2917KEGG: slo:Shew_3567 transcriptional regulator, TetR family. (218 aa)
Ssed_3111KEGG: slo:Shew_1313 transcriptional regulator, TetR family. (210 aa)
Ssed_3112KEGG: slo:Shew_1312 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (374 aa)
Ssed_3113KEGG: slo:Shew_1311 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1030 aa)
Ssed_3212KEGG: vpa:VPA0362 putative outer membrane protein. (494 aa)
Ssed_3213KEGG: vpa:VPA0363 putative efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1027 aa)
Ssed_3214KEGG: vpa:VPA0364 putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
Ssed_3868KEGG: pha:PSHAa0579 cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1044 aa)
Ssed_3869KEGG: pha:PSHAa0578 cobalt-zinc-cadmium resistance protein; (cation efflux system protein). (432 aa)
Ssed_3870KEGG: ilo:IL0779 Co/Zn/Cd efflux system component. (448 aa)
Ssed_3991KEGG: pin:Ping_0922 hypothetical protein. (212 aa)
Ssed_3992KEGG: ilo:IL0466 RND efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (366 aa)
Ssed_3993KEGG: pha:PSHAb0438 putative metabolite exporter, AcrB/D/F family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1025 aa)
Ssed_3994KEGG: vpa:VPA0472 putative long-chain fatty acid transport protein. (371 aa)
Ssed_4081KEGG: slo:Shew_3356 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1082 aa)
Ssed_4082KEGG: slo:Shew_3357 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (455 aa)
Ssed_4083KEGG: slo:Shew_3358 outer membrane efflux family protein, putative. (443 aa)
Ssed_4148KEGG: shn:Shewana3_0373 transcriptional regulator, TetR family. (213 aa)
Ssed_4149KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (372 aa)
Ssed_4150KEGG: shn:Shewana3_0371 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1027 aa)
Ssed_4375KEGG: slo:Shew_0044 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1038 aa)
Ssed_4376KEGG: slo:Shew_0045 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (370 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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