STRINGSTRING
Ssed_0132 Ssed_0132 Ssed_0133 Ssed_0133 Ssed_0134 Ssed_0134 Ssed_0135 Ssed_0135 Ssed_0136 Ssed_0136
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0132KEGG: sbl:Sbal_0090 ABC transporter related. (458 aa)
Ssed_0133KEGG: sbl:Sbal_0091 cobalt transport protein. (230 aa)
Ssed_0134KEGG: slo:Shew_3673 hypothetical protein. (181 aa)
Ssed_0135KEGG: slo:Shew_3672 hypothetical protein. (251 aa)
Ssed_0136KEGG: shm:Shewmr7_3955 hypothetical protein. (72 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.