STRINGSTRING
Ssed_1390 Ssed_1390 Ssed_1392 Ssed_1392 Ssed_1393 Ssed_1393 Ssed_1395 Ssed_1395 Ssed_1396 Ssed_1396 Ssed_1397 Ssed_1397 Ssed_1399 Ssed_1399
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_1390KEGG: sfr:Sfri_2735 cation antiporter. (182 aa)
Ssed_1392KEGG: sfr:Sfri_2736 multiple resistance and pH regulation protein F. (92 aa)
Ssed_1393KEGG: sfr:Sfri_2737 monovalent cation/proton antiporter, MnhG/PhaG subunit. (99 aa)
Ssed_1395KEGG: sfr:Sfri_2739 hypothetical protein. (218 aa)
Ssed_1396KEGG: sfr:Sfri_2740 NADH-ubiquinone oxidoreductase, chain 4L. (102 aa)
Ssed_1397KEGG: sfr:Sfri_2741 NADH dehydrogenase (quinone). (501 aa)
Ssed_1399KEGG: sfr:Sfri_2743 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein. (437 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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