STRINGSTRING
Ssed_1661 Ssed_1661 Ssed_2716 Ssed_2716 Ssed_2717 Ssed_2717 Ssed_2719 Ssed_2719 Ssed_3602 Ssed_3602 Ssed_3603 Ssed_3603
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_1661KEGG: slo:Shew_2270 alpha/beta hydrolase fold. (429 aa)
Ssed_2716KEGG: ilo:IL0305 MutT/NUDIX family protein; Belongs to the Nudix hydrolase family. (137 aa)
Ssed_2717Acetyltransferase; KEGG: vfi:VFA0662 acetyltransferase. (145 aa)
Ssed_2719KEGG: sfr:Sfri_1258 hypothetical protein. (247 aa)
Ssed_3602KEGG: gme:Gmet_2649 glyoxalase/bleomycin resistance protein/dioxygenase. (129 aa)
Ssed_3603KEGG: ppr:PBPRA1646 conserved hypothetical protein. (308 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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