STRINGSTRING
Ssed_0160 Ssed_0160 Ssed_0180 Ssed_0180 Ssed_0330 Ssed_0330 Ssed_0475 Ssed_0475 Ssed_0575 Ssed_0575 Ssed_0640 Ssed_0640 Ssed_0679 Ssed_0679 Ssed_0732 Ssed_0732 Ssed_1087 Ssed_1087 nhaA nhaA Ssed_1347 Ssed_1347 Ssed_1393 Ssed_1393 Ssed_1395 Ssed_1395 Ssed_1396 Ssed_1396 Ssed_1447 Ssed_1447 Ssed_1822 Ssed_1822 Ssed_1998 Ssed_1998 Ssed_2117 Ssed_2117 nhaB nhaB Ssed_2683 Ssed_2683 Ssed_3143 Ssed_3143 Ssed_3333 Ssed_3333 Ssed_3604 Ssed_3604 Ssed_3663 Ssed_3663 Ssed_3664 Ssed_3664 Ssed_3665 Ssed_3665 nhaP2 nhaP2 Ssed_3919 Ssed_3919 Ssed_3934 Ssed_3934 Ssed_3950 Ssed_3950 Ssed_3964 Ssed_3964 Ssed_4016 Ssed_4016 Ssed_4190 Ssed_4190
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0160KEGG: ppr:PBPRB1940 putative Na+-driven multidrug efflux pump. (468 aa)
Ssed_0180KEGG: sbl:Sbal_0144 MATE efflux family protein. (445 aa)
Ssed_0330KEGG: sbl:Sbal_0350 Na+/Ca+ antiporter, CaCA family. (310 aa)
Ssed_0475KEGG: slo:Shew_0344 Na+/H+ antiporter NhaC. (505 aa)
Ssed_0575KEGG: slo:Shew_0418 arsenical-resistance protein. (349 aa)
Ssed_0640KEGG: slo:Shew_0470 MATE efflux family protein. (454 aa)
Ssed_0679KEGG: slo:Shew_0699 Na+/H+ antiporter. (492 aa)
Ssed_0732KEGG: slo:Shew_3305 Na+/Ca+ antiporter, CaCA family. (319 aa)
Ssed_1087KEGG: shw:Sputw3181_3046 citrate transporter. (415 aa)
nhaANa+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. (399 aa)
Ssed_1347KEGG: vfi:VFA0260 glutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (640 aa)
Ssed_1393KEGG: sfr:Sfri_2737 monovalent cation/proton antiporter, MnhG/PhaG subunit. (99 aa)
Ssed_1395KEGG: sfr:Sfri_2739 hypothetical protein. (218 aa)
Ssed_1396KEGG: sfr:Sfri_2740 NADH-ubiquinone oxidoreductase, chain 4L. (102 aa)
Ssed_1447KEGG: slo:Shew_2582 Na+/H+ antiporter NhaC. (521 aa)
Ssed_1822KEGG: slo:Shew_1492 MATE efflux family protein. (505 aa)
Ssed_1998KEGG: sdn:Sden_1732 sodium/hydrogen exchanger. (616 aa)
Ssed_2117KEGG: slo:Shew_2037 MATE efflux family protein. (458 aa)
nhaBNa+/H+ antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. (527 aa)
Ssed_2683KEGG: slo:Shew_2150 integral membrane protein TerC. (83 aa)
Ssed_3143KEGG: slo:Shew_2617 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (649 aa)
Ssed_3333KEGG: sbl:Sbal_1342 multi antimicrobial extrusion protein MatE. (448 aa)
Ssed_3604KEGG: vpa:VP0618 hypothetical protein. (466 aa)
Ssed_3663Multisubunit Na+/H+ antiporter MnhG subunit-like protein; KEGG: hne:HNE_0731 monovalent cation/proton antiporter, MnhG/PhaG family. (113 aa)
Ssed_3664KEGG: sfr:Sfri_2284 Na+/H+ antiporter MnhB subunit-related protein. (334 aa)
Ssed_3665KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L. (122 aa)
nhaP2Sodium/hydrogen exchanger; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. (574 aa)
Ssed_3919KEGG: pin:Ping_0636 cyclic nucleotide-binding protein. (682 aa)
Ssed_3934KEGG: slo:Shew_3178 Na+/H+ antiporter NhaC. (457 aa)
Ssed_3950KEGG: noc:Noc_0960 sodium/hydrogen exchanger. (414 aa)
Ssed_3964KEGG: slo:Shew_3217 sodium/hydrogen exchanger. (402 aa)
Ssed_4016KEGG: slo:Shew_3267 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (541 aa)
Ssed_4190KEGG: sbl:Sbal_4057 Na+/H+ antiporter NhaC. (497 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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