STRINGSTRING
Ssed_1110 Ssed_1110 Ssed_4483 Ssed_4483 Ssed_3888 Ssed_3888 Ssed_3242 Ssed_3242 Ssed_2752 Ssed_2752 Ssed_2248 Ssed_2248 Ssed_1814 Ssed_1814 Ssed_1575 Ssed_1575 Ssed_1496 Ssed_1496
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_1110Outer membrane receptor protein mostly Fe transport-like protein; KEGG: mmr:Mmar10_1982 TonB-dependent receptor, plug. (862 aa)
Ssed_4483KEGG: slo:Shew_3841 TonB-dependent siderophore receptor. (712 aa)
Ssed_3888KEGG: shm:Shewmr7_3399 TonB-dependent receptor. (730 aa)
Ssed_3242KEGG: cps:CPS_1347 TonB-dependent receptor. (811 aa)
Ssed_2752KEGG: slo:Shew_1735 TonB-dependent receptor. (736 aa)
Ssed_2248KEGG: swi:Swit_4129 TonB-dependent receptor. (777 aa)
Ssed_1814KEGG: ppr:PBPRB1222 putative putative ferrichrome-iron receptor. (693 aa)
Ssed_1575TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
Ssed_1496KEGG: slo:Shew_1688 TonB-dependent receptor. (716 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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