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def-2 def-2 Ssed_0010 Ssed_0010 Ssed_0018 Ssed_0018 def def Ssed_0181 Ssed_0181 cheB cheB Ssed_0250 Ssed_0250 folE folE lpxC lpxC Ssed_0428 Ssed_0428 purH purH Ssed_0525 Ssed_0525 Ssed_0564 Ssed_0564 cheD cheD Ssed_0653 Ssed_0653 Ssed_0751 Ssed_0751 Ssed_0794 Ssed_0794 Ssed_0872 Ssed_0872 arnD arnD Ssed_0976 Ssed_0976 Ssed_1059 Ssed_1059 Ssed_1213 Ssed_1213 glsA glsA Ssed_1273 Ssed_1273 pyrG pyrG Ssed_1313 Ssed_1313 Ssed_1442 Ssed_1442 Ssed_1443 Ssed_1443 folD folD ribA ribA Ssed_1646 Ssed_1646 nadE nadE Ssed_1824 Ssed_1824 Ssed_2223 Ssed_2223 Ssed_2245 Ssed_2245 Ssed_2256 Ssed_2256 Ssed_2312 Ssed_2312 Ssed_2324 Ssed_2324 astE astE aguA aguA Ssed_2407 Ssed_2407 dapE dapE hisH hisH hisI hisI Ssed_2607 Ssed_2607 cdd cdd Ssed_2715 Ssed_2715 Ssed_2803 Ssed_2803 cobB cobB astB astB cheB-2 cheB-2 Ssed_3079 Ssed_3079 tadA tadA purU purU Ssed_3220 Ssed_3220 Ssed_3258 Ssed_3258 Ssed_3498 Ssed_3498 add add pyrC pyrC Ssed_3657 Ssed_3657 Ssed_4035 Ssed_4035 Ssed_4095 Ssed_4095 Ssed_4277 Ssed_4277 Ssed_4280 Ssed_4280 hutI hutI Ssed_4453 Ssed_4453
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
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def-2Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (163 aa)
Ssed_0010LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (248 aa)
Ssed_0018Amidohydrolase; KEGG: slo:Shew_0013 amidohydrolase. (1081 aa)
defPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (170 aa)
Ssed_0181KEGG: sbl:Sbal_0145 polysaccharide deacetylase. (353 aa)
cheBProtein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (345 aa)
Ssed_0250KEGG: slo:Shew_3592 Sel1 domain protein repeat-containing protein. (472 aa)
folEKEGG: slo:Shew_3486 GTP cyclohydrolase I. (219 aa)
lpxCUDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. (306 aa)
Ssed_0428KEGG: slo:Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD. (205 aa)
purHIMP cyclohydrolase; KEGG: slo:Shew_3412 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. (534 aa)
Ssed_0525Nitrilase; KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (317 aa)
Ssed_0564KEGG: sbl:Sbal_3816 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (281 aa)
cheDCheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. (209 aa)
Ssed_0653KEGG: tde:TDE0675 hypothetical protein. (279 aa)
Ssed_0751KEGG: slo:Shew_3290 Sel1 domain protein repeat-containing protein. (227 aa)
Ssed_0794KEGG: slo:Shew_0563 N-acetylmuramoyl-L-alanine amidase. (440 aa)
Ssed_0872KEGG: slo:Shew_3159 uncharacterized FlgJ-related protein-like. (342 aa)
arnDPolysaccharide deacetylase; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily. (305 aa)
Ssed_0976KEGG: slo:Shew_3770 Sel1 domain protein repeat-containing protein. (269 aa)
Ssed_1059Peptidase C26; KEGG: slo:Shew_0971 peptidase C26. (253 aa)
Ssed_1213KEGG: shw:Sputw3181_3087 N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family. (375 aa)
glsAGlutaminase; KEGG: slo:Shew_1126 glutaminase; Belongs to the glutaminase family. (304 aa)
Ssed_1273Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (374 aa)
pyrGCTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (545 aa)
Ssed_1313Phosphatase; KEGG: aor:AO090010000317 predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 Pfam: A1pp PROSITE: SIRTUIN. (287 aa)
Ssed_1442KEGG: slo:Shew_2587 hypothetical protein. (439 aa)
Ssed_1443Amidohydrolase; KEGG: slo:Shew_2586 amidohydrolase. (1024 aa)
folDMethylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (284 aa)
ribAGTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. (205 aa)
Ssed_1646KEGG: vvy:VVA0935 putative protein-glutamate methylesterase. (193 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source. (276 aa)
Ssed_1824KEGG: shw:Sputw3181_1730 uncharacterized conserved protein UCP029143; Belongs to the UPF0267 family. (105 aa)
Ssed_2223KEGG: slo:Shew_1997 Bax protein, putative. (275 aa)
Ssed_2245Amidohydrolase 3; KEGG: swi:Swit_2059 amidohydrolase 3. (596 aa)
Ssed_2256Negative regulator of beta-lactamase expression-like protein; KEGG: sfv:SFV_0855 putative regulator. (259 aa)
Ssed_2312Lysophospholipase; KEGG: she:Shewmr4_1908 L-asparaginases, type I. (337 aa)
Ssed_2324NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source. (326 aa)
astESuccinylglutamate desuccinylase/aspartoacylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (347 aa)
aguAAgmatine deiminase; KEGG: csa:Csal_1189 porphyromonas-type peptidyl-arginine deiminase. (365 aa)
Ssed_2407KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase. (319 aa)
dapESuccinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (376 aa)
hisHImidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (218 aa)
hisIKEGG: slo:Shew_2204 phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family. (209 aa)
Ssed_2607KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family. (306 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. (296 aa)
Ssed_2715Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. (339 aa)
Ssed_2803N-isopropylammelide isopropylaminohydrolase; KEGG: ppr:PBPRB1375 putative cytosine deaminase. (431 aa)
cobBKEGG: slo:Shew_1662 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily. (258 aa)
astBSuccinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). (445 aa)
cheB-2Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (371 aa)
Ssed_3079KEGG: slo:Shew_1353 flagellar rod assembly protein/muramidase FlgJ. (337 aa)
tadACytidine/deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (177 aa)
purUFormyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (277 aa)
Ssed_3220KEGG: slo:Shew_2669 penicillin amidase. (768 aa)
Ssed_3258KEGG: slo:Shew_3024 amidohydrolase 3. (548 aa)
Ssed_3498KEGG: sfr:Sfri_0668 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family. (260 aa)
addKEGG: vvy:VVA1020 adenosine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily. (331 aa)
pyrCDihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. (344 aa)
Ssed_3657KEGG: slo:Shew_3055 CMP/dCMP deaminase, zinc-binding. (145 aa)
Ssed_4035KEGG: slo:Shew_0527 Sel1 domain protein repeat-containing protein. (277 aa)
Ssed_4095KEGG: slo:Shew_3372 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. (347 aa)
Ssed_4277KEGG: slo:Shew_0201 acetylornithine deacetylase (ArgE). (383 aa)
Ssed_4280KEGG: shw:Sputw3181_3863 competence/damage-inducible protein CinA; Belongs to the CinA family. (424 aa)
hutIKEGG: slo:Shew_3759 imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (408 aa)
Ssed_4453KEGG: slo:Shew_3770 Sel1 domain protein repeat-containing protein. (266 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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