Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ssed_0391 | Ssed_2129 | Ssed_0391 | Ssed_2129 | KEGG: slo:Shew_3474 ATP-dependent DNA helicase RecQ. | KEGG: slo:Shew_2022 AAA ATPase, central domain protein. | 0.700 |
| Ssed_0391 | Ssed_2318 | Ssed_0391 | Ssed_2318 | KEGG: slo:Shew_3474 ATP-dependent DNA helicase RecQ. | KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase. | 0.920 |
| Ssed_0762 | Ssed_1564 | Ssed_0762 | Ssed_1564 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | KEGG: slo:Shew_2485 primosomal replication protein N'', putative. | 0.467 |
| Ssed_0762 | Ssed_2441 | Ssed_0762 | Ssed_2441 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | KEGG: sbl:Sbal_1786 chromosomal replication initiator, DnaA; Belongs to the DnaA family. | 0.759 |
| Ssed_0762 | dnaG | Ssed_0762 | Ssed_1073 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.950 |
| Ssed_0762 | priA | Ssed_0762 | Ssed_0534 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.640 |
| Ssed_0762 | priB | Ssed_0762 | Ssed_0758 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Single-strand binding protein/primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family. | 0.640 |
| Ssed_1009 | Ssed_3494 | Ssed_1009 | Ssed_3494 | KEGG: shn:Shewana3_1132 DNA polymerase III chi subunit, HolC. | KEGG: sfr:Sfri_0690 hypothetical protein. | 0.814 |
| Ssed_1564 | Ssed_0762 | Ssed_1564 | Ssed_0762 | KEGG: slo:Shew_2485 primosomal replication protein N'', putative. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.467 |
| Ssed_2129 | Ssed_0391 | Ssed_2129 | Ssed_0391 | KEGG: slo:Shew_2022 AAA ATPase, central domain protein. | KEGG: slo:Shew_3474 ATP-dependent DNA helicase RecQ. | 0.700 |
| Ssed_2129 | Ssed_2318 | Ssed_2129 | Ssed_2318 | KEGG: slo:Shew_2022 AAA ATPase, central domain protein. | KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase. | 0.645 |
| Ssed_2318 | Ssed_0391 | Ssed_2318 | Ssed_0391 | KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase. | KEGG: slo:Shew_3474 ATP-dependent DNA helicase RecQ. | 0.920 |
| Ssed_2318 | Ssed_2129 | Ssed_2318 | Ssed_2129 | KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase. | KEGG: slo:Shew_2022 AAA ATPase, central domain protein. | 0.645 |
| Ssed_2441 | Ssed_0762 | Ssed_2441 | Ssed_0762 | KEGG: sbl:Sbal_1786 chromosomal replication initiator, DnaA; Belongs to the DnaA family. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.759 |
| Ssed_3494 | Ssed_1009 | Ssed_3494 | Ssed_1009 | KEGG: sfr:Sfri_0690 hypothetical protein. | KEGG: shn:Shewana3_1132 DNA polymerase III chi subunit, HolC. | 0.814 |
| dnaG | Ssed_0762 | Ssed_1073 | Ssed_0762 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.950 |
| dnaG | priA | Ssed_1073 | Ssed_0534 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.475 |
| dnaG | priB | Ssed_1073 | Ssed_0758 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Single-strand binding protein/primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family. | 0.746 |
| priA | Ssed_0762 | Ssed_0534 | Ssed_0762 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.640 |
| priA | dnaG | Ssed_0534 | Ssed_1073 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.475 |
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