STRINGSTRING
Ssed_1934 Ssed_1934 Ssed_1633 Ssed_1633 Ssed_1381 Ssed_1381 Ssed_1366 Ssed_1366 Ssed_3261 Ssed_3261 Ssed_3337 Ssed_3337 Ssed_3344 Ssed_3344 Ssed_4373 Ssed_4373 Ssed_0046 Ssed_0046 Ssed_3217 Ssed_3217 Ssed_0842 Ssed_0842 Ssed_0627 Ssed_0627 Ssed_0434 Ssed_0434
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_1934KEGG: ppr:PBPRB0486 hypothetical protein. (634 aa)
Ssed_1633KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1447 aa)
Ssed_1381KEGG: hch:HCH_00809 signal transduction histidine kinase. (1468 aa)
Ssed_1366KEGG: sbl:Sbal_0430 diguanylate cyclase with PAS/PAC sensor. (329 aa)
Ssed_3261FOG: GGDEF domain-like protein; KEGG: mag:amb3617 hypothetical protein YddU. (702 aa)
Ssed_3337KEGG: slo:Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1020 aa)
Ssed_3344Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein; KEGG: aeh:Mlg_0074 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1055 aa)
Ssed_4373KEGG: slo:Shew_0041 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1076 aa)
Ssed_0046KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). (836 aa)
Ssed_3217KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein. (951 aa)
Ssed_0842KEGG: sbl:Sbal_1251 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (817 aa)
Ssed_0627Histidine kinase; KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase. (1200 aa)
Ssed_0434KEGG: slo:Shew_3428 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1485 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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