STRINGSTRING
Ssed_0046 Ssed_0046 Ssed_0434 Ssed_0434 Ssed_0627 Ssed_0627 Ssed_0987 Ssed_0987 Ssed_1154 Ssed_1154 Ssed_1366 Ssed_1366 Ssed_1633 Ssed_1633 Ssed_1934 Ssed_1934 Ssed_1987 Ssed_1987 Ssed_2690 Ssed_2690 Ssed_3337 Ssed_3337 Ssed_3354 Ssed_3354
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0046KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). (836 aa)
Ssed_0434KEGG: slo:Shew_3428 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1485 aa)
Ssed_0627Histidine kinase; KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase. (1200 aa)
Ssed_0987Histidine kinase; KEGG: slo:Shew_0907 PAS/PAC sensor hybrid histidine kinase. (938 aa)
Ssed_1154KEGG: ppu:PP_4405 sensory box protein. (340 aa)
Ssed_1366KEGG: sbl:Sbal_0430 diguanylate cyclase with PAS/PAC sensor. (329 aa)
Ssed_1633KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1447 aa)
Ssed_1934KEGG: ppr:PBPRB0486 hypothetical protein. (634 aa)
Ssed_1987KEGG: sfr:Sfri_3219 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor. (518 aa)
Ssed_2690KEGG: slo:Shew_2159 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor. (524 aa)
Ssed_3337KEGG: slo:Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s). (1020 aa)
Ssed_3354KEGG: slo:Shew_2791 PAS/PAC sensor signal transduction histidine kinase. (1242 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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