STRINGSTRING
Ssed_0168 Ssed_0168 Ssed_0279 Ssed_0279 Ssed_0492 Ssed_0492 Ssed_0503 Ssed_0503 Ssed_0526 Ssed_0526 Ssed_0690 Ssed_0690 Ssed_0691 Ssed_0691 Ssed_0712 Ssed_0712 Ssed_0755 Ssed_0755 Ssed_0815 Ssed_0815 Ssed_0869 Ssed_0869 Ssed_0879 Ssed_0879 Ssed_0883 Ssed_0883 Ssed_0905 Ssed_0905 Ssed_0929 Ssed_0929 Ssed_0981 Ssed_0981 Ssed_1032 Ssed_1032 Ssed_1101 Ssed_1101 Ssed_1731 Ssed_1731 Ssed_1867 Ssed_1867 Ssed_1951 Ssed_1951 Ssed_1969 Ssed_1969 Ssed_1974 Ssed_1974 Ssed_2091 Ssed_2091 Ssed_2141 Ssed_2141 Ssed_2142 Ssed_2142 Ssed_2144 Ssed_2144 Ssed_2282 Ssed_2282 Ssed_2316 Ssed_2316 Ssed_2455 Ssed_2455 Ssed_2457 Ssed_2457 Ssed_2590 Ssed_2590 Ssed_2759 Ssed_2759 Ssed_3140 Ssed_3140 Ssed_3246 Ssed_3246 Ssed_3303 Ssed_3303 Ssed_3465 Ssed_3465 Ssed_3875 Ssed_3875 Ssed_3945 Ssed_3945 Ssed_3996 Ssed_3996 Ssed_4408 Ssed_4408
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0168KEGG: slo:Shew_3637 two component transcriptional regulator, winged helix family. (241 aa)
Ssed_0279KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family. (227 aa)
Ssed_0492KEGG: shw:Sputw3181_0585 transcriptional regulator, CadC. (427 aa)
Ssed_0503KEGG: shn:Shewana3_0499 transcriptional regulator, CadC. (427 aa)
Ssed_0526Hypothetical protein; KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family. (267 aa)
Ssed_0690KEGG: son:SO4624 transcriptional regulator, LuxR family. (252 aa)
Ssed_0691KEGG: spc:Sputcn32_3798 two component transcriptional regulator, winged helix family. (224 aa)
Ssed_0712KEGG: slo:Shew_3317 two component transcriptional regulator, winged helix family. (228 aa)
Ssed_0755Hypothetical protein; KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family. (249 aa)
Ssed_0815KEGG: slo:Shew_0777 two component transcriptional regulator, winged helix family. (239 aa)
Ssed_0869KEGG: bam:Bamb_1916 transcriptional regulator, LuxR family. (321 aa)
Ssed_0879Hypothetical protein; KEGG: slo:Shew_0757 putative transcriptional regulator, CadC. (248 aa)
Ssed_0883KEGG: slo:Shew_0760 response regulator receiver protein. (244 aa)
Ssed_0905KEGG: cps:CPS_1260 putative nitrate/nitrite DNA-binding response regulator. (206 aa)
Ssed_0929KEGG: slo:Shew_0842 two component transcriptional regulator, LuxR family. (209 aa)
Ssed_0981KEGG: slo:Shew_0896 two component transcriptional regulator, winged helix family. (237 aa)
Ssed_1032KEGG: hch:HCH_06917 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (232 aa)
Ssed_1101KEGG: shm:Shewmr7_2965 transcriptional regulator domain protein. (713 aa)
Ssed_1731Hypothetical protein; KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family. (240 aa)
Ssed_1867KEGG: slo:Shew_1545 two component transcriptional regulator, LuxR family. (219 aa)
Ssed_1951KEGG: pau:PA14_13730 putative nitrate/nitrite response regulator; NarL. (213 aa)
Ssed_1969Hypothetical protein. (233 aa)
Ssed_1974KEGG: sfr:Sfri_3676 two component transcriptional regulator, winged helix family protein. (223 aa)
Ssed_2091Hypothetical protein; KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family. (245 aa)
Ssed_2141Hypothetical protein; KEGG: son:SO4624 transcriptional regulator, LuxR family. (277 aa)
Ssed_2142Hypothetical protein; KEGG: son:SO4624 transcriptional regulator, LuxR family. (253 aa)
Ssed_2144Hypothetical protein; KEGG: spc:Sputcn32_3799 response regulator receiver protein. (253 aa)
Ssed_2282KEGG: slo:Shew_1969 two component transcriptional regulator, LuxR family. (199 aa)
Ssed_2316KEGG: saz:Sama_1718 response regulator receiver protein. (226 aa)
Ssed_2455KEGG: slo:Shew_1824 two component transcriptional regulator, LuxR family. (214 aa)
Ssed_2457Hypothetical protein; KEGG: son:SO4624 transcriptional regulator, LuxR family. (240 aa)
Ssed_2590KEGG: csa:Csal_0968 two component transcriptional regulator, winged helix family. (230 aa)
Ssed_2759KEGG: saz:Sama_1446 response regulator receiver protein. (211 aa)
Ssed_3140KEGG: slo:Shew_2614 two component transcriptional regulator, LuxR family. (220 aa)
Ssed_3246KEGG: spc:Sputcn32_3852 two component transcriptional regulator, winged helix family. (231 aa)
Ssed_3303KEGG: slo:Shew_2749 two component transcriptional regulator, winged helix family. (229 aa)
Ssed_3465DNA-binding winged-HTH domains-like protein; KEGG: shw:Sputw3181_0585 transcriptional regulator, CadC. (435 aa)
Ssed_3875KEGG: slo:Shew_0583 two component transcriptional regulator, winged helix family. (224 aa)
Ssed_3945KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family. (221 aa)
Ssed_3996Hypothetical protein. (185 aa)
Ssed_4408KEGG: slo:Shew_0081 two component transcriptional regulator, winged helix family. (242 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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