(16 nodes) MetI-like superfamily network (Shewanella sediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ssed_1063	KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component. (301 aa)
	Ssed_1064	Ornithine carbamoyltransferase; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component. (275 aa)
	Ssed_1501	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component. (752 aa)
	Ssed_1502	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA. (550 aa)
	Ssed_1550	KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component. (296 aa)
	Ssed_1551	KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component. (343 aa)
	Ssed_1676	KEGG: asa:ASA_1795 ABC-type dipeptide/oligopeptide/nickel transporter, permease component. (330 aa)
	Ssed_1677	KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC. (276 aa)
	Ssed_1794	KEGG: slo:Shew_2345 binding-protein-dependent transport systems inner membrane component. (510 aa)
	Ssed_3761	KEGG: slo:Shew_3165 polar amino acid ABC transporter, inner membrane subunit. (226 aa)
	Ssed_4236	KEGG: ppr:PBPRB1789 putative permease. (299 aa)
	Ssed_4396	Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (226 aa)
	Ssed_0123	KEGG: slo:Shew_3684 binding-protein-dependent transport systems inner membrane component. (235 aa)
	Ssed_0698	KEGG: lip:LI1029 phosphate transporter permease PstC. (292 aa)
	Ssed_0699	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component. (298 aa)
	Ssed_0946	KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component. (543 aa)

Your Current Organism:

Shewanella sediminis

NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Ssed_0698	Ssed_0699	KEGG: lip:LI1029 phosphate transporter permease PstC.	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component.	0.999
Ssed_0698	Ssed_1501	KEGG: lip:LI1029 phosphate transporter permease PstC.	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component.	0.913
Ssed_0698	Ssed_1502	KEGG: lip:LI1029 phosphate transporter permease PstC.	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	0.991
Ssed_0699	Ssed_0698	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component.	KEGG: lip:LI1029 phosphate transporter permease PstC.	0.999
Ssed_0699	Ssed_1501	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component.	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component.	0.973
Ssed_0699	Ssed_1502	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component.	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	0.924
Ssed_1063	Ssed_1064	KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component.	Ornithine carbamoyltransferase; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component.	0.999
Ssed_1064	Ssed_1063	Ornithine carbamoyltransferase; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component.	KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component.	0.999
Ssed_1064	Ssed_1677	Ornithine carbamoyltransferase; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component.	KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC.	0.424
Ssed_1501	Ssed_0698	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component.	KEGG: lip:LI1029 phosphate transporter permease PstC.	0.913
Ssed_1501	Ssed_0699	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component.	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component.	0.973
Ssed_1501	Ssed_1502	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component.	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	0.996
Ssed_1502	Ssed_0698	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	KEGG: lip:LI1029 phosphate transporter permease PstC.	0.991
Ssed_1502	Ssed_0699	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component.	0.924
Ssed_1502	Ssed_1501	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component.	0.996
Ssed_1502	Ssed_1794	KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA.	KEGG: slo:Shew_2345 binding-protein-dependent transport systems inner membrane component.	0.492
Ssed_1550	Ssed_1551	KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component.	KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component.	0.991
Ssed_1550	Ssed_1676	KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component.	KEGG: asa:ASA_1795 ABC-type dipeptide/oligopeptide/nickel transporter, permease component.	0.812
Ssed_1551	Ssed_1550	KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component.	KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component.	0.991
Ssed_1551	Ssed_1677	KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component.	KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC.	0.774

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