STRINGSTRING
Ssed_0426 Ssed_0426 Ssed_0550 Ssed_0550 Ssed_0551 Ssed_0551 Ssed_0552 Ssed_0552 Ssed_0553 Ssed_0553 Ssed_0554 Ssed_0554 Ssed_0555 Ssed_0555 Ssed_0573 Ssed_0573 Ssed_1198 Ssed_1198 Ssed_1199 Ssed_1199 Ssed_1202 Ssed_1202 Ssed_1204 Ssed_1204 Ssed_1205 Ssed_1205 Ssed_1380 Ssed_1380 Ssed_1388 Ssed_1388 Ssed_1451 Ssed_1451 Ssed_2452 Ssed_2452 Ssed_3025 Ssed_3025 Ssed_3026 Ssed_3026 Ssed_3027 Ssed_3027 Ssed_3030 Ssed_3030 Ssed_3689 Ssed_3689 Ssed_3690 Ssed_3690 Ssed_4352 Ssed_4352 Ssed_4353 Ssed_4353 Ssed_4354 Ssed_4354 Ssed_4355 Ssed_4355
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0426KEGG: sfr:Sfri_3782 methylation site containing protein; Belongs to the N-Me-Phe pilin family. (136 aa)
Ssed_0550KEGG: slo:Shew_0395 methylation site containing protein. (218 aa)
Ssed_0551KEGG: saz:Sama_0461 MSHA pilin protein MshA. (173 aa)
Ssed_0552KEGG: saz:Sama_0461 MSHA pilin protein MshA. (159 aa)
Ssed_0553KEGG: shw:Sputw3181_3603 MSHA pilin protein MshC. (155 aa)
Ssed_0554KEGG: slo:Shew_0399 methylation site containing protein. (198 aa)
Ssed_0555KEGG: slo:Shew_0400 methylation site containing protein. (269 aa)
Ssed_0573KEGG: slo:Shew_0364 MshA, mannose-sensitive haemaglutinin. (166 aa)
Ssed_1198KEGG: slo:Shew_1103 type IV pilus modification protein PilV. (173 aa)
Ssed_1199KEGG: shn:Shewana3_3131 prepilin-type cleavage/methylation-like protein. (328 aa)
Ssed_1202KEGG: saz:Sama_0932 type IV pilus biogenesis protein PilE. (130 aa)
Ssed_1204KEGG: slo:Shew_1108 methylation site containing protein. (162 aa)
Ssed_1205KEGG: slo:Shew_1109 type IV pilus biogenesis protein, putative. (169 aa)
Ssed_1380KEGG: slo:Shew_0396 methylation site containing protein. (190 aa)
Ssed_1388KEGG: shm:Shewmr7_1064 methylation site containing protein. (175 aa)
Ssed_1451KEGG: shm:Shewmr7_0473 methylation site containing protein. (192 aa)
Ssed_2452KEGG: slo:Shew_1827 methylation site containing protein. (197 aa)
Ssed_3025Hypothetical protein. (224 aa)
Ssed_3026Hypothetical protein. (145 aa)
Ssed_3027Hypothetical protein. (151 aa)
Ssed_3030KEGG: mfa:Mfla_2421 general secretion pathway protein G. (139 aa)
Ssed_3689KEGG: slo:Shew_3074 pilin, putative. (186 aa)
Ssed_3690KEGG: sfr:Sfri_3092 methylation site containing protein. (185 aa)
Ssed_4352KEGG: slo:Shew_3613 general secretion pathway protein J. (250 aa)
Ssed_4353KEGG: sbl:Sbal_4201 general secretion pathway protein I. (123 aa)
Ssed_4354KEGG: slo:Shew_3615 general secretion pathway protein H. (190 aa)
Ssed_4355KEGG: slo:Shew_3616 general secretion pathway protein G. (144 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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