STRINGSTRING
Ssed_0152 Ssed_0152 Ssed_0153 Ssed_0153 Ssed_0278 Ssed_0278 Ssed_0279 Ssed_0279 Ssed_0741 Ssed_0741 Ssed_0774 Ssed_0774 Ssed_0794 Ssed_0794 arnF arnF arnE arnE arnT arnT arnD arnD arnA arnA arnC arnC arnB arnB Ssed_1255 Ssed_1255 Ssed_1266 Ssed_1266 Ssed_1548 Ssed_1548 Ssed_1549 Ssed_1549 Ssed_1550 Ssed_1550 Ssed_1551 Ssed_1551 Ssed_1552 Ssed_1552 Ssed_1742 Ssed_1742 Ssed_1790 Ssed_1790 Ssed_1791 Ssed_1791 Ssed_1976 Ssed_1976 Ssed_2284 Ssed_2284 Ssed_2285 Ssed_2285 Ssed_2316 Ssed_2316 Ssed_2427 Ssed_2427 Ssed_2428 Ssed_2428 Ssed_2820 Ssed_2820 lpxA lpxA Ssed_3246 Ssed_3246 Ssed_3247 Ssed_3247 Ssed_3264 Ssed_3264 Ssed_3440 Ssed_3440 Ssed_4149 Ssed_4149 Ssed_4150 Ssed_4150 Ssed_4193 Ssed_4193
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ssed_0152KEGG: slo:Shew_0031 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (385 aa)
Ssed_0153KEGG: slo:Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family. (1050 aa)
Ssed_0278KEGG: sbl:Sbal_0260 integral membrane sensor signal transduction histidine kinase. (455 aa)
Ssed_0279KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family. (227 aa)
Ssed_0741KEGG: mgm:Mmc1_3443 response regulator receiver protein. (210 aa)
Ssed_0774KEGG: slo:Shew_0544 type I secretion outer membrane protein, TolC family. (441 aa)
Ssed_0794KEGG: slo:Shew_0563 N-acetylmuramoyl-L-alanine amidase. (440 aa)
arnFConserved hypothetical protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnF family. (145 aa)
arnEConserved hypothetical protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family. (120 aa)
arnTundecaprenylphosphate-alpha-4-amino-4-deoxy-L- arabinosearabinosyltra nsferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family. (546 aa)
arnDPolysaccharide deacetylase; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily. (305 aa)
arnABifunctional polymyxin resistance ArnA protein (polymyxin resistanceprotein PmrI); Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic aci [...] (660 aa)
arnCGlycosyl transferase, group 2 family protein; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. (331 aa)
arnBUDP-4-amino-4-deoxy-L-arabinose-- oxoglutarateaminotransferase; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily. (388 aa)
Ssed_1255KEGG: slo:Shew_1163 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)
Ssed_1266KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (371 aa)
Ssed_1548KEGG: shm:Shewmr7_2556 ABC transporter related. (261 aa)
Ssed_1549KEGG: slo:Shew_2501 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily. (337 aa)
Ssed_1550KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component. (296 aa)
Ssed_1551KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component. (343 aa)
Ssed_1552KEGG: slo:Shew_2498 extracellular solute-binding protein, family 5. (551 aa)
Ssed_1742KEGG: slo:Shew_2373 DsbA oxidoreductase. (210 aa)
Ssed_1790KEGG: slo:Shew_2349 integral membrane sensor signal transduction histidine kinase. (451 aa)
Ssed_1791KEGG: slo:Shew_2348 two component transcriptional regulator, winged helix family. (224 aa)
Ssed_1976KEGG: sfr:Sfri_3678 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (412 aa)
Ssed_2284KEGG: shn:Shewana3_1993 acriflavin resistance protein. (1055 aa)
Ssed_2285KEGG: she:Shewmr4_1939 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (428 aa)
Ssed_2316KEGG: saz:Sama_1718 response regulator receiver protein. (226 aa)
Ssed_2427KEGG: slo:Shew_1852 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1031 aa)
Ssed_2428KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (361 aa)
Ssed_2820KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (363 aa)
lpxAAcyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (255 aa)
Ssed_3246KEGG: spc:Sputcn32_3852 two component transcriptional regulator, winged helix family. (231 aa)
Ssed_3247KEGG: pin:Ping_0281 sensor histidine kinase with ATPase domain. (469 aa)
Ssed_3264KEGG: cps:CPS_2717 putative sulfatase. (556 aa)
Ssed_3440Peptidyl-prolyl cis-trans isomerase, cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (194 aa)
Ssed_4149KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (372 aa)
Ssed_4150KEGG: shn:Shewana3_0371 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1027 aa)
Ssed_4193KEGG: slo:Shew_0265 DsbA oxidoreductase. (203 aa)
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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