STRINGSTRING
hnrnpl hnrnpl LOC108414043 LOC108414043 LOC108443858 LOC108443858 HNRNPH3 HNRNPH3 tra2a tra2a phax phax ilf3 ilf3 sarnp sarnp hnrnpu hnrnpu LOC108429259 LOC108429259 tnpo3 tnpo3 taf15 taf15 LOC108435409 LOC108435409 ilf2 ilf2 LOC108440343 LOC108440343 SRSF10 SRSF10 ENSPNAP00000003471 ENSPNAP00000003471 srsf3 srsf3 srrt srrt LOC108430966 LOC108430966 srsf5 srsf5 smg7 smg7 pcbp2 pcbp2 LOC108411937 LOC108411937 raly raly zranb2 zranb2 rbm25 rbm25 LOC108433690 LOC108433690 LOC108437054 LOC108437054 znf318 znf318 srsf7 srsf7 srsf11 srsf11 alyref alyref LOC108435868 LOC108435868 srsf6 srsf6 LOC108428021 LOC108428021 ewsr1 ewsr1 LOC108410769 LOC108410769 LOC108439109 LOC108439109 LOC108431323 LOC108431323 ncbp3 ncbp3 tial1 tial1 grsf1 grsf1 smg6 smg6 raver1 raver1 rspry1 rspry1 casc3 casc3 trnau1ap trnau1ap fyttd1 fyttd1 LOC108440733 LOC108440733 chtop chtop YBX2 YBX2 LOC108439591 LOC108439591 thoc5 thoc5 ENSPNAP00000011659 ENSPNAP00000011659 prpf38b prpf38b LOC108437489 LOC108437489 ENSPNAP00000012265 ENSPNAP00000012265 LOC108436873 LOC108436873 pym1 pym1 LOC108441744 LOC108441744 LOC108428349 LOC108428349 smg1 smg1 upf3a upf3a rbmx rbmx HNRNPUL1 HNRNPUL1 ENSPNAP00000014024 ENSPNAP00000014024 thoc2 thoc2 prpf39 prpf39 snrnp35 snrnp35 LOC108436786 LOC108436786 LOC108411053 LOC108411053 upf3b upf3b acin1 acin1 hnrnpa1 hnrnpa1 pabpn1l pabpn1l LOC108424984 LOC108424984 LOC108442283 LOC108442283 ptbp2 ptbp2 LOC108440069 LOC108440069 tardbp tardbp LOC108441675 LOC108441675 ncbp2 ncbp2 snrnp48 snrnp48 hnrnpr hnrnpr LOC108418277 LOC108418277 ENSPNAP00000016959 ENSPNAP00000016959 LOC108442882 LOC108442882 srpk3 srpk3 thoc3 thoc3 ptbp1 ptbp1 srrm1 srrm1 LOC108436686 LOC108436686 smg9 smg9 LOC108424881 LOC108424881 upf1 upf1 ralyl ralyl LOC108439900 LOC108439900 LOC108435460 LOC108435460 smg5 smg5 ybx1 ybx1 LOC108436540 LOC108436540 ENSPNAP00000023202 ENSPNAP00000023202 hnrnph1 hnrnph1 LOC108424170 LOC108424170 LOC108431401 LOC108431401 eif4a3 eif4a3 LOC108423543 LOC108423543 ENSPNAP00000023905 ENSPNAP00000023905 LOC108412528 LOC108412528 LOC108438154 LOC108438154 celf2 celf2 UPF2 UPF2 ENSPNAP00000024775 ENSPNAP00000024775 LOC108430244 LOC108430244 sap18 sap18 LOC108435966 LOC108435966 LOC108432475 LOC108432475 LOC108436365 LOC108436365 LOC108427558 LOC108427558 zrsr2 zrsr2 LOC108413700 LOC108413700 LOC108437052 LOC108437052 LOC108441918 LOC108441918 HNRNPLL HNRNPLL LOC108438027 LOC108438027 snrpc snrpc LOC108430168 LOC108430168 sf1 sf1 ENSPNAP00000027647 ENSPNAP00000027647 ENSPNAP00000028084 ENSPNAP00000028084 thoc7 thoc7 smg8 smg8 LOC108430781 LOC108430781 hnrnpdl hnrnpdl LOC108444194 LOC108444194 ptbp3 ptbp3 hnrnpk hnrnpk pnisr pnisr pnn pnn LOC108411755 LOC108411755 ENSPNAP00000030964 ENSPNAP00000030964 srpk1 srpk1 LOC108441755 LOC108441755 LOC108441235 LOC108441235 thoc6 thoc6 fus fus LOC108437863 LOC108437863 srsf9 srsf9 ENSPNAP00000032160 ENSPNAP00000032160 cirbp cirbp hnrnpm hnrnpm sltm sltm HNRNPA3 HNRNPA3 dhx9 dhx9 LOC108415197 LOC108415197 LOC108428188 LOC108428188 poldip3 poldip3 ENSPNAP00000034100 ENSPNAP00000034100 carhsp1 carhsp1 HNRNPA0 HNRNPA0 thoc1 thoc1 luc7l3 luc7l3 pabpn1 pabpn1 LOC108415889 LOC108415889 LOC108413865 LOC108413865 ddx39b ddx39b LOC108441668 LOC108441668 LOC108427635 LOC108427635 NCBP1 NCBP1 srek1 srek1 LOC108441033 LOC108441033 rbm8a rbm8a LOC108444131 LOC108444131 ENSPNAP00000037415 ENSPNAP00000037415 ppp1r10 ppp1r10 hnrnpul1 hnrnpul1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hnrnplHeterogeneous nuclear ribonucleoprotein L2. (531 aa)
LOC108414043Uncharacterized protein. (241 aa)
LOC108443858Heterogeneous nuclear ribonucleoprotein K, like. (432 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3. (397 aa)
tra2aTransformer 2 alpha homolog. (289 aa)
phaxPhosphorylated adaptor for RNA export. (399 aa)
ilf3Interleukin enhancer binding factor 3b. (853 aa)
sarnpSAP domain containing ribonucleoprotein. (208 aa)
hnrnpuHeterogeneous nuclear ribonucleoprotein Ub. (803 aa)
LOC108429259Si:ch211-220i18.4. (343 aa)
tnpo3Transportin 3. (923 aa)
taf15TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (418 aa)
LOC108435409EWS RNA-binding protein 1a. (643 aa)
ilf2Interleukin enhancer binding factor 2. (387 aa)
LOC108440343Uncharacterized protein. (304 aa)
SRSF10Serine and arginine rich splicing factor 10. (212 aa)
ENSPNAP00000003471Zinc finger protein 804B. (94 aa)
srsf3Serine and arginine rich splicing factor 3. (168 aa)
srrtSerrate RNA effector molecule homolog (Arabidopsis). (756 aa)
LOC108430966Si:ch211-107m4.1. (759 aa)
srsf5Serine and arginine rich splicing factor 5b. (260 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1182 aa)
pcbp2Poly(rC) binding protein 2. (318 aa)
LOC108411937Zgc:158803. (361 aa)
ralyRALY heterogeneous nuclear ribonucleoprotein. (277 aa)
zranb2Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family. (311 aa)
rbm25RNA binding motif protein 25b. (815 aa)
LOC108433690RNA binding motif protein 5. (844 aa)
LOC108437054Serine and arginine rich splicing factor 7a. (248 aa)
znf318Zinc finger protein 318. (1717 aa)
srsf7Serine and arginine rich splicing factor 7b. (240 aa)
srsf11Serine and arginine rich splicing factor 11. (461 aa)
alyrefAly/REF export factor. (289 aa)
LOC108435868U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
srsf6Serine and arginine rich splicing factor 6. (234 aa)
LOC108428021Heterogeneous nuclear ribonucleoprotein H1, like. (408 aa)
ewsr1EWS RNA-binding protein 1b. (509 aa)
LOC108410769Transformer 2 beta homolog. (275 aa)
LOC108439109DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab. (427 aa)
LOC108431323Serine and arginine rich splicing factor 1b. (241 aa)
ncbp3Nuclear cap binding subunit 3. (687 aa)
tial1TIA1 cytotoxic granule-associated RNA binding protein-like 1. (374 aa)
grsf1G-rich RNA sequence binding factor 1. (395 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1503 aa)
raver1Ribonucleoprotein, PTB-binding 1. (731 aa)
rspry1Ring finger and SPRY domain containing 1. (586 aa)
casc3Casc3 exon junction complex subunit. (753 aa)
trnau1apRRM domain-containing protein. (172 aa)
fyttd1Uncharacterized protein. (335 aa)
LOC108440733Heterogeneous nuclear ribonucleoprotein D. (307 aa)
chtopChromatin target of PRMT1a. (245 aa)
YBX2Y-box binding protein 2. (324 aa)
LOC108439591Enhancer of rudimentary homolog; May have a role in the cell cycle. (104 aa)
thoc5THO complex 5. (705 aa)
ENSPNAP00000011659Uncharacterized protein. (148 aa)
prpf38bUncharacterized protein. (507 aa)
LOC108437489U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
ENSPNAP00000012265Uncharacterized protein. (233 aa)
LOC108436873RRM domain-containing protein. (443 aa)
pym1PYM homolog 1, exon junction complex associated factor. (209 aa)
LOC108441744Lin-28 homolog A (C. elegans). (201 aa)
LOC108428349tRNA selenocysteine 1 associated protein 1b. (320 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3646 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (481 aa)
rbmxRNA binding motif protein X-linked. (386 aa)
HNRNPUL1Heterogeneous nuclear ribonucleoprotein U like 1. (836 aa)
ENSPNAP00000014024Serine and arginine rich splicing factor 10b. (198 aa)
thoc2THO complex 2. (1476 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (258 aa)
LOC108436786U2 small nuclear RNA auxiliary factor 1. (174 aa)
LOC108411053Serine and arginine rich splicing factor 5a. (280 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (463 aa)
acin1Apoptotic chromatin condensation inducer 1a. (1511 aa)
hnrnpa1Uncharacterized protein. (368 aa)
pabpn1lPoly(A) binding protein, nuclear 1-like (cytoplasmic). (206 aa)
LOC108424984Scaffold attachment factor B. (850 aa)
LOC108442283Polypyrimidine tract binding protein 2b. (538 aa)
ptbp2Polypyrimidine tract binding protein 2a. (537 aa)
LOC108440069Apoptotic chromatin condensation inducer 1b. (1232 aa)
tardbpTAR DNA binding protein, like. (303 aa)
LOC108441675Mago homolog, exon junction complex subunit. (147 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (340 aa)
hnrnprHeterogeneous nuclear ribonucleoprotein R. (632 aa)
LOC108418277Si:ch211-114c17.1. (723 aa)
ENSPNAP00000016959Serine and arginine rich splicing factor 6a. (243 aa)
LOC108442882Serine and arginine rich splicing factor 4. (322 aa)
srpk3SRSF protein kinase 3. (702 aa)
thoc3THO complex 3. (322 aa)
ptbp1Polypyrimidine tract binding protein 1b. (564 aa)
srrm1Serine/arginine repetitive matrix 1. (748 aa)
LOC108436686Poly(rC) binding protein 4. (464 aa)
smg9SMG9 nonsense mediated mRNA decay factor. (504 aa)
LOC108424881RNA binding protein with serine rich domain 1. (277 aa)
upf1UPF1 RNA helicase and ATPase. (1100 aa)
ralylRALY RNA binding protein like. (287 aa)
LOC108439900U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
LOC108435460Uncharacterized protein. (211 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1094 aa)
ybx1Y box binding protein 1. (308 aa)
LOC108436540Chromatin target of PRMT1b. (223 aa)
ENSPNAP00000023202Heterogeneous nuclear ribonucleoprotein A1a. (250 aa)
hnrnph1Heterogeneous nuclear ribonucleoprotein H1. (409 aa)
LOC108424170Heterogeneous nuclear ribonucleoprotein A/Ba. (326 aa)
LOC108431401RRM domain-containing protein. (330 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
LOC108423543Synaptotagmin binding, cytoplasmic RNA interacting protein, like. (577 aa)
ENSPNAP00000023905BED-type domain-containing protein. (257 aa)
LOC108412528Ribonucleoprotein, PTB-binding 2. (654 aa)
LOC108438154Uncharacterized protein. (350 aa)
celf2Cugbp, Elav-like family member 2. (543 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1292 aa)
ENSPNAP00000024775RRM domain-containing protein. (66 aa)
LOC108430244Serine and arginine rich splicing factor 2a. (220 aa)
sap18Sin3A-associated protein. (189 aa)
LOC108435966Transformer 2 beta homolog. (306 aa)
LOC108432475Polypyrimidine tract binding protein 1a. (574 aa)
LOC108436365SRSF protein kinase 1b. (669 aa)
LOC108427558TAR DNA binding protein. (399 aa)
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (524 aa)
LOC108413700Serine and arginine rich splicing factor 3a. (168 aa)
LOC108437052Heterogeneous nuclear ribonucleoprotein L. (451 aa)
LOC108441918Protein S100; Belongs to the S-100 family. (96 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L like. (552 aa)
LOC108438027Arginine and glutamate rich 1a. (289 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
LOC108430168WW domain-containing protein. (521 aa)
sf1Splicing factor 1. (664 aa)
ENSPNAP00000027647Uncharacterized protein. (240 aa)
ENSPNAP00000028084Uncharacterized protein. (120 aa)
thoc7THO complex 7. (203 aa)
smg8SMG8 nonsense mediated mRNA decay factor. (926 aa)
LOC108430781Heterogeneous nuclear ribonucleoprotein C. (291 aa)
hnrnpdlHeterogeneous nuclear ribonucleoprotein D-like. (293 aa)
LOC108444194Cytotoxic granule-associated RNA binding protein 1, like. (373 aa)
ptbp3Polypyrimidine tract binding protein 3. (520 aa)
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (405 aa)
pnisrPNN-interacting serine/arginine-rich protein. (803 aa)
pnnPinin, desmosome associated protein. (684 aa)
LOC108411755RNA binding protein S1, serine-rich domain. (287 aa)
ENSPNAP00000030964Uncharacterized protein. (202 aa)
srpk1SRSF protein kinase 1a. (722 aa)
LOC108441755Si:dkey-33c12.4. (631 aa)
LOC108441235Proline-rich nuclear receptor coactivator 2. (158 aa)
thoc6THO complex 6. (323 aa)
fusFUS RNA binding protein. (508 aa)
LOC108437863Zgc:55733. (301 aa)
srsf9Serine and arginine rich splicing factor 9. (241 aa)
ENSPNAP00000032160RRM domain-containing protein. (90 aa)
cirbpCold inducible RNA binding protein b. (230 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (654 aa)
sltmSAFB-like, transcription modulator. (994 aa)
HNRNPA3Heterogeneous nuclear ribonucleoprotein A3. (363 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1264 aa)
LOC108415197Serine and arginine rich splicing factor 1a. (244 aa)
LOC108428188DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa. (427 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (479 aa)
ENSPNAP00000034100Serine and arginine rich splicing factor 6a. (130 aa)
carhsp1Calcium regulated heat stable protein 1. (167 aa)
HNRNPA0Heterogeneous nuclear ribonucleoprotein A0. (293 aa)
thoc1THO complex 1. (652 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (461 aa)
pabpn1Poly(A) binding protein, nuclear 1. (285 aa)
LOC108415889Synaptotagmin binding, cytoplasmic RNA interacting protein. (638 aa)
LOC108413865tRNA selenocysteine 1 associated protein 1a. (306 aa)
ddx39bDEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (436 aa)
LOC108441668Protein mago nashi homolog. (147 aa)
LOC108427635Tumor protein p63 regulated 1. (263 aa)
NCBP1Nuclear cap binding protein subunit 1. (797 aa)
srek1Splicing regulatory glutamine/lysine-rich protein 1. (518 aa)
LOC108441033Heterogeneous nuclear ribonucleoprotein A/Bb. (328 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
LOC108444131Zgc:110045. (279 aa)
ENSPNAP00000037415Zgc:110045. (204 aa)
ppp1r10Protein phosphatase 1, regulatory subunit 10. (779 aa)
hnrnpul1Heterogeneous nuclear ribonucleoprotein U-like 1. (820 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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