STRINGSTRING
sf3b1 sf3b1 sf3b6 sf3b6 prpf8 prpf8 lsm8 lsm8 sf3a3 sf3a3 snrpd3 snrpd3 ddx46 ddx46 snrnp200 snrnp200 prpf3 prpf3 sart1 sart1 eftud2 eftud2 snrpe snrpe sf3b3 sf3b3 rbm41 rbm41 prpf6 prpf6 snrpb snrpb lsm4 lsm4 snrnp70 snrnp70 prpf31 prpf31 snrpd1 snrpd1 ENSPNAP00000013234 ENSPNAP00000013234 ddx23 ddx23 snrpb2 snrpb2 sf3a1 sf3a1 snrpg snrpg lsm3 lsm3 snrpd2 snrpd2 lsm2 lsm2 lrmda lrmda cunh19orf54 cunh19orf54 snrpa snrpa sf3b5 sf3b5 sf3b4 sf3b4 prpf4 prpf4 LOC108437378 LOC108437378 LOC108412468 LOC108412468 lsm7 lsm7 phf5a phf5a sart3 sart3 sf3b2 sf3b2 lsm5 lsm5 lsm1 lsm1 snu13 snu13 lsm6 lsm6 txnl4a txnl4a snrnp40 snrnp40 sf3a2 sf3a2 LSM10 LSM10 ppih ppih
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
prpf8Pre-mRNA processing factor 8. (2338 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1029 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
rbm41RNA binding motif protein 41. (446 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (453 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
sf3a1Splicing factor 3a, subunit 1. (785 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
lrmdaLeucine rich melanocyte differentiation associated. (236 aa)
cunh19orf54Zgc:153119. (299 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (281 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
sf3b4Splicing factor 3b, subunit 4. (392 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
LOC108412468Leucine rich repeat containing 51. (181 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
phf5aPHD finger protein 5A. (110 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (953 aa)
sf3b2Splicing factor 3b, subunit 2. (882 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
sf3a2Splicing factor 3a, subunit 2. (302 aa)
LSM10LSM10, U7 small nuclear RNA associated. (120 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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