11 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf8	Pre-mRNA processing factor 8. (2338 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
	sart1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ddx23	eftud2	ENSPNAP00000013346	ENSPNAP00000006389	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	Elongation factor Tu GTP binding domain containing 2.	0.999
ddx23	prpf3	ENSPNAP00000013346	ENSPNAP00000005240	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.986
ddx23	prpf31	ENSPNAP00000013346	ENSPNAP00000011837	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.979
ddx23	prpf4	ENSPNAP00000013346	ENSPNAP00000023580	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.978
ddx23	prpf6	ENSPNAP00000013346	ENSPNAP00000010060	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.999
ddx23	prpf8	ENSPNAP00000013346	ENSPNAP00000002818	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 8.	0.999
ddx23	sart1	ENSPNAP00000013346	ENSPNAP00000006224	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.990
ddx23	snrnp200	ENSPNAP00000013346	ENSPNAP00000004468	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein 200 (U5).	0.994
ddx23	snrnp40	ENSPNAP00000013346	ENSPNAP00000036159	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein 40 (U5).	0.999
ddx23	txnl4a	ENSPNAP00000013346	ENSPNAP00000033974	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.999
eftud2	ddx23	ENSPNAP00000006389	ENSPNAP00000013346	Elongation factor Tu GTP binding domain containing 2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	0.999
eftud2	prpf3	ENSPNAP00000006389	ENSPNAP00000005240	Elongation factor Tu GTP binding domain containing 2.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.994
eftud2	prpf31	ENSPNAP00000006389	ENSPNAP00000011837	Elongation factor Tu GTP binding domain containing 2.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.995
eftud2	prpf4	ENSPNAP00000006389	ENSPNAP00000023580	Elongation factor Tu GTP binding domain containing 2.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.992
eftud2	prpf6	ENSPNAP00000006389	ENSPNAP00000010060	Elongation factor Tu GTP binding domain containing 2.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.999
eftud2	prpf8	ENSPNAP00000006389	ENSPNAP00000002818	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 8.	0.999
eftud2	sart1	ENSPNAP00000006389	ENSPNAP00000006224	Elongation factor Tu GTP binding domain containing 2.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.998
eftud2	snrnp200	ENSPNAP00000006389	ENSPNAP00000004468	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein 200 (U5).	0.999
eftud2	snrnp40	ENSPNAP00000006389	ENSPNAP00000036159	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein 40 (U5).	0.999
eftud2	txnl4a	ENSPNAP00000006389	ENSPNAP00000033974	Elongation factor Tu GTP binding domain containing 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.998