16 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1029 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (243 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	sf3a1	Splicing factor 3a, subunit 1. (785 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (281 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	sf3b4	Splicing factor 3b, subunit 4. (392 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	sf3b2	Splicing factor 3b, subunit 2. (882 aa)
	sf3a2	Splicing factor 3a, subunit 2. (302 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ddx46	phf5a	ENSPNAP00000004318	ENSPNAP00000026214	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	PHD finger protein 5A.	0.999
ddx46	sf3a1	ENSPNAP00000004318	ENSPNAP00000016215	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3a, subunit 1.	0.998
ddx46	sf3a2	ENSPNAP00000004318	ENSPNAP00000036612	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3a, subunit 2.	0.998
ddx46	sf3a3	ENSPNAP00000004318	ENSPNAP00000003821	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3a, subunit 3.	0.998
ddx46	sf3b1	ENSPNAP00000004318	ENSPNAP00000001630	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 1.	0.998
ddx46	sf3b2	ENSPNAP00000004318	ENSPNAP00000026414	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 2.	0.992
ddx46	sf3b3	ENSPNAP00000004318	ENSPNAP00000009877	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 3.	0.997
ddx46	sf3b4	ENSPNAP00000004318	ENSPNAP00000023573	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 4.	0.990
ddx46	sf3b5	ENSPNAP00000004318	ENSPNAP00000022040	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.998
ddx46	sf3b6	ENSPNAP00000004318	ENSPNAP00000002460	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Splicing factor 3b, subunit 6.	0.945
ddx46	snrpa	ENSPNAP00000004318	ENSPNAP00000021204	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein polypeptide A.	0.960
ddx46	snrpb	ENSPNAP00000004318	ENSPNAP00000010529	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein-associated protein.	0.970
ddx46	snrpd1	ENSPNAP00000004318	ENSPNAP00000012098	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.997
ddx46	snrpd2	ENSPNAP00000004318	ENSPNAP00000019039	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein Sm D2.	0.982
ddx46	snrpd3	ENSPNAP00000004318	ENSPNAP00000004099	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein Sm D3.	0.955
phf5a	ddx46	ENSPNAP00000026214	ENSPNAP00000004318	PHD finger protein 5A.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.999
phf5a	sf3a1	ENSPNAP00000026214	ENSPNAP00000016215	PHD finger protein 5A.	Splicing factor 3a, subunit 1.	0.991
phf5a	sf3a2	ENSPNAP00000026214	ENSPNAP00000036612	PHD finger protein 5A.	Splicing factor 3a, subunit 2.	0.998
phf5a	sf3a3	ENSPNAP00000026214	ENSPNAP00000003821	PHD finger protein 5A.	Splicing factor 3a, subunit 3.	0.994
phf5a	sf3b1	ENSPNAP00000026214	ENSPNAP00000001630	PHD finger protein 5A.	Splicing factor 3b, subunit 1.	0.999