5 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ythdf2	YTH N(6)-methyladenosine RNA binding protein 2. (614 aa)
	LOC108437571	YTH N(6)-methyladenosine RNA binding protein 1. (612 aa)
	rbm26	RNA binding motif protein 26. (1030 aa)
	zfc3h1	zf-C3H1 domain-containing protein. (1731 aa)
	rbm27	RNA binding motif protein 27. (989 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108437571	rbm26	ENSPNAP00000006436	ENSPNAP00000008514	YTH N(6)-methyladenosine RNA binding protein 1.	RNA binding motif protein 26.	0.429
LOC108437571	rbm27	ENSPNAP00000006436	ENSPNAP00000036419	YTH N(6)-methyladenosine RNA binding protein 1.	RNA binding motif protein 27.	0.429
LOC108437571	ythdf2	ENSPNAP00000006436	ENSPNAP00000002030	YTH N(6)-methyladenosine RNA binding protein 1.	YTH N(6)-methyladenosine RNA binding protein 2.	0.488
LOC108437571	zfc3h1	ENSPNAP00000006436	ENSPNAP00000030735	YTH N(6)-methyladenosine RNA binding protein 1.	zf-C3H1 domain-containing protein.	0.755
rbm26	LOC108437571	ENSPNAP00000008514	ENSPNAP00000006436	RNA binding motif protein 26.	YTH N(6)-methyladenosine RNA binding protein 1.	0.429
rbm26	ythdf2	ENSPNAP00000008514	ENSPNAP00000002030	RNA binding motif protein 26.	YTH N(6)-methyladenosine RNA binding protein 2.	0.425
rbm26	zfc3h1	ENSPNAP00000008514	ENSPNAP00000030735	RNA binding motif protein 26.	zf-C3H1 domain-containing protein.	0.798
rbm27	LOC108437571	ENSPNAP00000036419	ENSPNAP00000006436	RNA binding motif protein 27.	YTH N(6)-methyladenosine RNA binding protein 1.	0.429
rbm27	ythdf2	ENSPNAP00000036419	ENSPNAP00000002030	RNA binding motif protein 27.	YTH N(6)-methyladenosine RNA binding protein 2.	0.425
rbm27	zfc3h1	ENSPNAP00000036419	ENSPNAP00000030735	RNA binding motif protein 27.	zf-C3H1 domain-containing protein.	0.798
ythdf2	LOC108437571	ENSPNAP00000002030	ENSPNAP00000006436	YTH N(6)-methyladenosine RNA binding protein 2.	YTH N(6)-methyladenosine RNA binding protein 1.	0.488
ythdf2	rbm26	ENSPNAP00000002030	ENSPNAP00000008514	YTH N(6)-methyladenosine RNA binding protein 2.	RNA binding motif protein 26.	0.425
ythdf2	rbm27	ENSPNAP00000002030	ENSPNAP00000036419	YTH N(6)-methyladenosine RNA binding protein 2.	RNA binding motif protein 27.	0.425
ythdf2	zfc3h1	ENSPNAP00000002030	ENSPNAP00000030735	YTH N(6)-methyladenosine RNA binding protein 2.	zf-C3H1 domain-containing protein.	0.755
zfc3h1	LOC108437571	ENSPNAP00000030735	ENSPNAP00000006436	zf-C3H1 domain-containing protein.	YTH N(6)-methyladenosine RNA binding protein 1.	0.755
zfc3h1	rbm26	ENSPNAP00000030735	ENSPNAP00000008514	zf-C3H1 domain-containing protein.	RNA binding motif protein 26.	0.798
zfc3h1	rbm27	ENSPNAP00000030735	ENSPNAP00000036419	zf-C3H1 domain-containing protein.	RNA binding motif protein 27.	0.798
zfc3h1	ythdf2	ENSPNAP00000030735	ENSPNAP00000002030	zf-C3H1 domain-containing protein.	YTH N(6)-methyladenosine RNA binding protein 2.	0.755