15 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (243 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (380 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	prpf8	Pre-mRNA processing factor 8. (2338 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108437378	ddx23	ENSPNAP00000024183	ENSPNAP00000013346	Small nuclear ribonucleoprotein Sm D3.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	0.969
LOC108437378	prpf18	ENSPNAP00000024183	ENSPNAP00000034088	Small nuclear ribonucleoprotein Sm D3.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.619
LOC108437378	prpf6	ENSPNAP00000024183	ENSPNAP00000010060	Small nuclear ribonucleoprotein Sm D3.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.983
LOC108437378	prpf8	ENSPNAP00000024183	ENSPNAP00000002818	Small nuclear ribonucleoprotein Sm D3.	Pre-mRNA processing factor 8.	0.977
LOC108437378	snrnp200	ENSPNAP00000024183	ENSPNAP00000004468	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein 200 (U5).	0.972
LOC108437378	snrpb	ENSPNAP00000024183	ENSPNAP00000010529	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein-associated protein.	0.992
LOC108437378	snrpd1	ENSPNAP00000024183	ENSPNAP00000012098	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.998
LOC108437378	snrpd2	ENSPNAP00000024183	ENSPNAP00000019039	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.998
LOC108437378	snrpe	ENSPNAP00000024183	ENSPNAP00000007513	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
LOC108437378	snrpg	ENSPNAP00000024183	ENSPNAP00000016325	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.998
LOC108437378	txnl4a	ENSPNAP00000024183	ENSPNAP00000033974	Small nuclear ribonucleoprotein Sm D3.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.964
LOC108437378	txnl4b	ENSPNAP00000024183	ENSPNAP00000025414	Small nuclear ribonucleoprotein Sm D3.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.961
cd2bp2	ddx23	ENSPNAP00000007961	ENSPNAP00000013346	CD2 (cytoplasmic tail) binding protein 2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	0.960
cd2bp2	prpf6	ENSPNAP00000007961	ENSPNAP00000010060	CD2 (cytoplasmic tail) binding protein 2.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.949
cd2bp2	prpf8	ENSPNAP00000007961	ENSPNAP00000002818	CD2 (cytoplasmic tail) binding protein 2.	Pre-mRNA processing factor 8.	0.962
cd2bp2	snrnp200	ENSPNAP00000007961	ENSPNAP00000004468	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein 200 (U5).	0.993
cd2bp2	snrpb	ENSPNAP00000007961	ENSPNAP00000010529	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein-associated protein.	0.904
cd2bp2	snrpd1	ENSPNAP00000007961	ENSPNAP00000012098	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.734
cd2bp2	snrpd2	ENSPNAP00000007961	ENSPNAP00000019039	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein Sm D2.	0.727
cd2bp2	snrpe	ENSPNAP00000007961	ENSPNAP00000007513	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.846