STRINGSTRING
sf3b1 sf3b1 dhx8 dhx8 aqr aqr sf3b6 sf3b6 prpf8 prpf8 cwc27 cwc27 lsm8 lsm8 sf3a3 sf3a3 dhx15 dhx15 srrm4 srrm4 snrpd3 snrpd3 wbp4 wbp4 snrnp200 snrnp200 prpf3 prpf3 LOC108411937 LOC108411937 sart1 sart1 eftud2 eftud2 ENSPNAP00000006846 ENSPNAP00000006846 ENSPNAP00000007434 ENSPNAP00000007434 LOC108435868 LOC108435868 snrpe snrpe snw1 snw1 LOC108442464 LOC108442464 zmat2 zmat2 ENSPNAP00000009837 ENSPNAP00000009837 tfip11 tfip11 sf3b3 sf3b3 prpf6 prpf6 bcas2 bcas2 bud13 bud13 casc3 casc3 ppil1 ppil1 snrpb snrpb xab2 xab2 lsm4 lsm4 prpf31 prpf31 LOC108437489 LOC108437489 snrpd1 snrpd1 LOC108431794 LOC108431794 ccdc130 ccdc130 ENSPNAP00000013234 ENSPNAP00000013234 prpf19 prpf19 plrg1 plrg1 prpf39 prpf39 sf3a1 sf3a1 LOC108413879 LOC108413879 snrpg snrpg LOC108418277 LOC108418277 lsm3 lsm3 shd shd yju2 yju2 snrpd2 snrpd2 LOC108439900 LOC108439900 SNIP1 SNIP1 lsm2 lsm2 ccdc12 ccdc12 cwc25 cwc25 sf3b5 sf3b5 eif4a3 eif4a3 sf3b4 sf3b4 prpf4 prpf4 LOC108431508 LOC108431508 LOC108437378 LOC108437378 cdc40 cdc40 LOC108430993 LOC108430993 lsm7 lsm7 prpf38a prpf38a crnkl1 crnkl1 phf5a phf5a sf3b2 sf3b2 lsm5 lsm5 snrpc snrpc rbm22 rbm22 ENSPNAP00000028769 ENSPNAP00000028769 dhx34 dhx34 syf2 syf2 snu13 snu13 rnf113a rnf113a dhx16 dhx16 ENSPNAP00000031071 ENSPNAP00000031071 prpf40a prpf40a lsm6 lsm6 mfap1 mfap1 txnl4a txnl4a prpf18 prpf18 luc7l3 luc7l3 ppie ppie cwc22 cwc22 snrnp40 snrnp40 sf3a2 sf3a2 rbm8a rbm8a htatsf1 htatsf1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1210 aa)
aqrAquarius intron-binding spliceosomal factor. (1290 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
prpf8Pre-mRNA processing factor 8. (2338 aa)
cwc27CWC27 spliceosome associated cyclophilin. (469 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
dhx15DEAH (Asp-Glu-Ala-His) box helicase 15. (764 aa)
srrm4Serine/arginine repetitive matrix 4. (587 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
wbp4Uncharacterized protein. (286 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
LOC108411937Zgc:158803. (361 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
ENSPNAP00000006846Uncharacterized protein. (141 aa)
ENSPNAP00000007434Uncharacterized protein. (273 aa)
LOC108435868U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
snw1SNW domain containing 1. (521 aa)
LOC108442464SMU1 DNA replication regulator and spliceosomal factor a. (513 aa)
zmat2Zinc finger, matrin-type 2. (198 aa)
ENSPNAP00000009837Uncharacterized protein. (79 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (835 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
bud13BUD13 homolog. (559 aa)
casc3Casc3 exon junction complex subunit. (753 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
xab2XPA binding protein 2. (847 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
LOC108437489U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
LOC108431794SMU1 DNA replication regulator and spliceosomal factor b. (539 aa)
ccdc130Coiled-coil domain containing 130. (404 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
plrg1Pleiotropic regulator 1. (512 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
sf3a1Splicing factor 3a, subunit 1. (785 aa)
LOC108413879CWC15 spliceosome associated protein homolog. (189 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
LOC108418277Si:ch211-114c17.1. (723 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
shdSrc homology 2 domain containing transforming protein D, a. (395 aa)
yju2YJU2 splicing factor homolog. (343 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
LOC108439900U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
SNIP1Smad nuclear interacting protein 1. (363 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
ccdc12Coiled-coil domain containing 12. (150 aa)
cwc25CWC25 spliceosome associated protein homolog. (397 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
sf3b4Splicing factor 3b, subunit 4. (392 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
LOC108431508ISY1 splicing factor homolog. (285 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (578 aa)
LOC108430993Uncharacterized protein. (422 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
prpf38aPre-mRNA processing factor 38A. (313 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (746 aa)
phf5aPHD finger protein 5A. (110 aa)
sf3b2Splicing factor 3b, subunit 2. (882 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
rbm22RNA binding motif protein 22. (426 aa)
ENSPNAP00000028769Ribosomal_L7Ae domain-containing protein. (109 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1150 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
rnf113aRing finger protein 113A. (321 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1055 aa)
ENSPNAP00000031071Uncharacterized protein. (380 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (843 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
mfap1Microfibril associated protein 1. (440 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (461 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
cwc22CWC22 spliceosome associated protein homolog. (1384 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
sf3a2Splicing factor 3a, subunit 2. (302 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
htatsf1HIV-1 Tat specific factor 1. (464 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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