STRINGSTRING
prpf39 prpf39 ENSPNAP00000013234 ENSPNAP00000013234 snrpd3 snrpd3 LOC108411937 LOC108411937 luc7l3 luc7l3 prpf40a prpf40a snrpc snrpc LOC108437378 LOC108437378 snrpa snrpa snrpd2 snrpd2 snrpd1 snrpd1 snrpb snrpb snrpe snrpe LOC108418277 LOC108418277 snrpg snrpg snrpb2 snrpb2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
LOC108411937Zgc:158803. (361 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (461 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (843 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (281 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
LOC108418277Si:ch211-114c17.1. (723 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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