STRINGSTRING
LOC108437378 LOC108437378 LOC108413669 LOC108413669 snrpc snrpc LOC108412468 LOC108412468 snu13 snu13 LOC108413617 LOC108413617 LOC108430993 LOC108430993 coil coil sf3b3 sf3b3 lsm4 lsm4 LOC108424845 LOC108424845 ro60 ro60 lsm3 lsm3 ncbp2 ncbp2 toe1 toe1 snrpb2 snrpb2 rbm41 rbm41 sart3 sart3 lsm11 lsm11 gemin5 gemin5 ccnt1 ccnt1 LOC108425957 LOC108425957 prpf8 prpf8 snrpd3 snrpd3 eftud2 eftud2 LSM10 LSM10 mettl16 mettl16 prpf31 prpf31 snrnp70 snrnp70 ENSPNAP00000028769 ENSPNAP00000028769 ccnt2 ccnt2 rbm22 rbm22 larp7 larp7 rbmx rbmx snrnp35 snrnp35 lrmda lrmda snrpa snrpa rnpc3 rnpc3 prpf4 prpf4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
LOC108413669Si:ch1073-157b13.1. (709 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
LOC108412468Leucine rich repeat containing 51. (181 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
LOC108413617Methylphosphate capping enzyme. (782 aa)
LOC108430993Uncharacterized protein. (422 aa)
coilCoilin p80. (523 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
LOC108424845HEXIM P-TEFb complex subunit 1. (326 aa)
ro60Ro60, Y RNA binding protein. (542 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
toe1Target of EGR1, exonuclease. (516 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
rbm41RNA binding motif protein 41. (446 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (953 aa)
lsm11LSM11, U7 small nuclear RNA associated. (343 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1484 aa)
ccnt1Cyclin T1; Belongs to the cyclin family. (683 aa)
LOC108425957Cyclin T2a; Belongs to the cyclin family. (675 aa)
prpf8Pre-mRNA processing factor 8. (2338 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
LSM10LSM10, U7 small nuclear RNA associated. (120 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (530 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (453 aa)
ENSPNAP00000028769Ribosomal_L7Ae domain-containing protein. (109 aa)
ccnt2Cyclin T2b; Belongs to the cyclin family. (580 aa)
rbm22RNA binding motif protein 22. (426 aa)
larp7La ribonucleoprotein domain family, member 7. (567 aa)
rbmxRNA binding motif protein X-linked. (386 aa)
snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (258 aa)
lrmdaLeucine rich melanocyte differentiation associated. (236 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (281 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (515 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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