57 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108418277	Si:ch211-114c17.1. (723 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (120 aa)
	htatsf1	HIV-1 Tat specific factor 1. (464 aa)
	sf3a2	Splicing factor 3a, subunit 2. (302 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	luc7l3	LUC7-like 3 pre-mRNA splicing factor. (461 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	lsm11	LSM11, U7 small nuclear RNA associated. (343 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	prpf40a	PRP40 pre-mRNA processing factor 40 homolog A. (843 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
	rbmx2	RRM domain-containing protein. (396 aa)
	ENSPNAP00000028769	Ribosomal_L7Ae domain-containing protein. (109 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	sf3b2	Splicing factor 3b, subunit 2. (882 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (281 aa)
	cunh19orf54	Zgc:153119. (299 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	prpf8	Pre-mRNA processing factor 8. (2338 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
	LOC108411937	Zgc:158803. (361 aa)
	sart1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	ENSPNAP00000006846	Uncharacterized protein. (141 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (380 aa)
	zmat2	Zinc finger, matrin-type 2. (198 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (243 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
	larp7	La ribonucleoprotein domain family, member 7. (567 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	usp39	Ubiquitin specific peptidase 39. (520 aa)
	ENSPNAP00000013234	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
	sf3a1	Splicing factor 3a, subunit 1. (785 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000006846	ENSPNAP00000013234	ENSPNAP00000006846	ENSPNAP00000013234	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.954
ENSPNAP00000006846	ENSPNAP00000028769	ENSPNAP00000006846	ENSPNAP00000028769	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.694
ENSPNAP00000006846	LOC108411937	ENSPNAP00000006846	ENSPNAP00000005615	Uncharacterized protein.	Zgc:158803.	0.616
ENSPNAP00000006846	LOC108418277	ENSPNAP00000006846	ENSPNAP00000016938	Uncharacterized protein.	Si:ch211-114c17.1.	0.627
ENSPNAP00000006846	LOC108437378	ENSPNAP00000006846	ENSPNAP00000024183	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.943
ENSPNAP00000006846	LSM10	ENSPNAP00000006846	ENSPNAP00000037283	Uncharacterized protein.	LSM10, U7 small nuclear RNA associated.	0.940
ENSPNAP00000006846	cunh19orf54	ENSPNAP00000006846	ENSPNAP00000021195	Uncharacterized protein.	Zgc:153119.	0.839
ENSPNAP00000006846	ddx23	ENSPNAP00000006846	ENSPNAP00000013346	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	0.890
ENSPNAP00000006846	eftud2	ENSPNAP00000006846	ENSPNAP00000006389	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.922
ENSPNAP00000006846	htatsf1	ENSPNAP00000006846	ENSPNAP00000037167	Uncharacterized protein.	HIV-1 Tat specific factor 1.	0.911
ENSPNAP00000006846	lsm2	ENSPNAP00000006846	ENSPNAP00000020841	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.913
ENSPNAP00000006846	lsm3	ENSPNAP00000006846	ENSPNAP00000017243	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.839
ENSPNAP00000006846	lsm4	ENSPNAP00000006846	ENSPNAP00000010969	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.921
ENSPNAP00000006846	lsm5	ENSPNAP00000006846	ENSPNAP00000026422	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.859
ENSPNAP00000006846	lsm6	ENSPNAP00000006846	ENSPNAP00000031435	Uncharacterized protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.866
ENSPNAP00000006846	lsm7	ENSPNAP00000006846	ENSPNAP00000025185	Uncharacterized protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.876
ENSPNAP00000006846	lsm8	ENSPNAP00000006846	ENSPNAP00000003820	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.885
ENSPNAP00000006846	luc7l3	ENSPNAP00000006846	ENSPNAP00000034303	Uncharacterized protein.	LUC7-like 3 pre-mRNA splicing factor.	0.616
ENSPNAP00000006846	phf5a	ENSPNAP00000006846	ENSPNAP00000026214	Uncharacterized protein.	PHD finger protein 5A.	0.977
ENSPNAP00000006846	prpf3	ENSPNAP00000006846	ENSPNAP00000005240	Uncharacterized protein.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.937